Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_B08
         (494 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo...   184   5e-48
SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo...   184   7e-48
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb...    27   2.1  
SPAPYUG7.06 |mug67||PPPDE peptidase family |Schizosaccharomyces ...    26   2.7  
SPAC1F8.06 |fta5|sma5|Sim4 and Mal2 associated |Schizosaccharomy...    25   4.7  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    25   8.3  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    25   8.3  

>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  184 bits (449), Expect = 5e-48
 Identities = 82/113 (72%), Positives = 95/113 (84%)
 Frame = +1

Query: 79  LSVARPLVSVYSEKSEVVAGASLPLPFVFKAPIRPDLVNDVHVSMSKNARQPYCVSKEAG 258
           ++ ARP VS+YS K   V+  ++ LPFVFKAPIRPDLV  VH +++KN RQPY VS++AG
Sbjct: 1   MAAARPTVSIYS-KDGSVSSETIALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAG 59

Query: 259 HQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWH 417
           HQTSAESWGTGRA+ARIPRV GGGTHRSGQ AFGNMCR GRMFAPTK WR+WH
Sbjct: 60  HQTSAESWGTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRKWH 112


>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  184 bits (448), Expect = 7e-48
 Identities = 82/113 (72%), Positives = 95/113 (84%)
 Frame = +1

Query: 79  LSVARPLVSVYSEKSEVVAGASLPLPFVFKAPIRPDLVNDVHVSMSKNARQPYCVSKEAG 258
           ++ ARP VS+Y+ K   V+  +L LPFVFKAPIRPDLV  VH +++KN RQPY VS++AG
Sbjct: 1   MAAARPTVSIYN-KDGSVSSETLALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAG 59

Query: 259 HQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWH 417
           HQTSAESWGTGRA+ARIPRV GGGTHRSGQ AFGNMCR GRMFAPTK WR+WH
Sbjct: 60  HQTSAESWGTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRKWH 112


>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1778

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = -1

Query: 197 SLTRSGLMGALNTNGRGSEAPATTSLF 117
           S T SGL GA NTN +   +   T LF
Sbjct: 593 STTTSGLFGASNTNNQAQTSNFGTGLF 619


>SPAPYUG7.06 |mug67||PPPDE peptidase family |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 201

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 16/40 (40%), Positives = 19/40 (47%)
 Frame = -3

Query: 459 GGHGSTSLP*VHATVPAPPRLGRREHTSAAAHVTECTLPR 340
           G H       V AT+P PP  G R   S A  +  CTLP+
Sbjct: 42  GAHEIPGSTGVFATMPRPPLEGCRWRCSIA--LPNCTLPK 79


>SPAC1F8.06 |fta5|sma5|Sim4 and Mal2 associated |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 385

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -2

Query: 439 SAVGSRDGASASTAWSARTYVRRGTCYRMHPAQIC 335
           S V S   ++  +  S  T+V   T Y++ P QIC
Sbjct: 132 STVSSTPVSTIYSGTSGTTFVSSSTTYQVIPTQIC 166


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -1

Query: 377  PPRHMLPNAPCPDLWVPPP 321
            PP+   P  P P + VPPP
Sbjct: 1699 PPQMSAPTPPPPPMSVPPP 1717


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 15/36 (41%), Positives = 17/36 (47%)
 Frame = -1

Query: 377  PPRHMLPNAPCPDLWVPPPRTRGIRATARPVPQDSA 270
            PP    P  P P + VPP       +TA PVP  SA
Sbjct: 1192 PPPSEAPPVPKPSVGVPPVPP---PSTAPPVPTPSA 1224



 Score = 24.6 bits (51), Expect = 8.3
 Identities = 13/42 (30%), Positives = 15/42 (35%)
 Frame = -1

Query: 395  VGANIRPPRHMLPNAPCPDLWVPPPRTRGIRATARPVPQDSA 270
            VG    PP    P  P P   +PP      +A   P P   A
Sbjct: 1205 VGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVPAPSSEA 1246


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,853,009
Number of Sequences: 5004
Number of extensions: 34229
Number of successful extensions: 99
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 194131776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)