Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_B08
(494 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0) 185 2e-47
SB_37045| Best HMM Match : Drf_FH1 (HMM E-Value=0.95) 29 2.1
SB_26672| Best HMM Match : Exo_endo_phos (HMM E-Value=0.46) 29 2.8
SB_32646| Best HMM Match : IQ (HMM E-Value=8.5e-07) 29 2.8
SB_1163| Best HMM Match : DMA (HMM E-Value=1.4e-11) 29 2.8
SB_53717| Best HMM Match : Furin-like (HMM E-Value=0.05) 28 3.7
SB_26352| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.7
SB_52034| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.9
SB_29069| Best HMM Match : Furin-like (HMM E-Value=0.042) 28 4.9
SB_18582| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.9
SB_14427| Best HMM Match : Cadherin (HMM E-Value=0) 28 4.9
SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.4
SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33) 27 8.5
SB_44477| Best HMM Match : IBR (HMM E-Value=0.00086) 27 8.5
SB_621| Best HMM Match : SNF2_N (HMM E-Value=0) 27 8.5
>SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0)
Length = 299
Score = 185 bits (450), Expect = 2e-47
Identities = 83/110 (75%), Positives = 94/110 (85%)
Frame = +1
Query: 88 ARPLVSVYSEKSEVVAGASLPLPFVFKAPIRPDLVNDVHVSMSKNARQPYCVSKEAGHQT 267
ARP+++V++E E + LP VFKAPIRPDLVN VH +++KN RQPY V+K AGHQT
Sbjct: 2 ARPVITVFNENGE--SAGQTTLPAVFKAPIRPDLVNFVHSNIAKNKRQPYAVNKLAGHQT 59
Query: 268 SAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWH 417
SAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTK WR+WH
Sbjct: 60 SAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRKWH 109
>SB_37045| Best HMM Match : Drf_FH1 (HMM E-Value=0.95)
Length = 1080
Score = 29.1 bits (62), Expect = 2.1
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +1
Query: 265 TSAESWGTGRAVARIPR-VRGGGTHRSGQGAFGNMCRGGR 381
T +E +G ++ R PR RGGG G G G RGGR
Sbjct: 983 TPSEPSSSGSSIVRRPRRRRGGGGGGGGGGGGGGGRRGGR 1022
>SB_26672| Best HMM Match : Exo_endo_phos (HMM E-Value=0.46)
Length = 1232
Score = 28.7 bits (61), Expect = 2.8
Identities = 16/58 (27%), Positives = 26/58 (44%)
Frame = -1
Query: 191 TRSGLMGALNTNGRGSEAPATTSLFSEYTDTKGRATDRLISLYQRSYSSKKHYRRWQR 18
T S + L + RGS PA ++D T R + L +R Y S +++Q+
Sbjct: 1150 TASAKLACLQVDSRGSPKPAVKVFGLSWSDKSSDKTVREMFLAKRKYKSCAPVKQYQK 1207
>SB_32646| Best HMM Match : IQ (HMM E-Value=8.5e-07)
Length = 465
Score = 28.7 bits (61), Expect = 2.8
Identities = 14/30 (46%), Positives = 15/30 (50%)
Frame = -1
Query: 368 HMLPNAPCPDLWVPPPRTRGIRATARPVPQ 279
H +P P P PPP TRG TA P Q
Sbjct: 383 HPIPTYPAP----PPPTTRGEMTTATPATQ 408
>SB_1163| Best HMM Match : DMA (HMM E-Value=1.4e-11)
Length = 403
Score = 28.7 bits (61), Expect = 2.8
Identities = 16/48 (33%), Positives = 22/48 (45%)
Frame = -2
Query: 160 QTGGGAKPLRRPHSSPNTPTLKVGLLTDSFRFISEVIPPKNTIDGGKD 17
Q A P R +TP + LT +F F E +PP+ +D G D
Sbjct: 177 QHSAPASPAREEKERKSTPVREPLNLTRNFPF--ENVPPRGRVDSGSD 222
>SB_53717| Best HMM Match : Furin-like (HMM E-Value=0.05)
Length = 1098
Score = 28.3 bits (60), Expect = 3.7
Identities = 17/43 (39%), Positives = 19/43 (44%)
Frame = +1
Query: 283 GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRR 411
G GR + R P GGG R G +G M GG P W R
Sbjct: 271 GQGRGMGRGP---GGGWGRGSGGGWGRMQGGGMGRGPGGGWGR 310
>SB_26352| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 283
Score = 28.3 bits (60), Expect = 3.7
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = -1
Query: 149 GSEAPATTSLFSEYTDTKGRATDRLISLYQRSYSSKKHYRRWQRPSAPR 3
G + ATTS + Y T+G T ++S + + +RPS PR
Sbjct: 156 GQPSNATTSSSTSYPSTEGTTTTPVVSPVTSPTAGHSRRTQIRRPSLPR 204
>SB_52034| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 122
Score = 27.9 bits (59), Expect = 4.9
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = -2
Query: 142 KPLRRPHSSPNTP-TLKVGLLTDSFRFISEVIPPKNTIDGG 23
+P+RR +S N L V LLT ++RF + V K + GG
Sbjct: 74 QPMRRQNSDGNGHLNLPVILLTSAYRFSASVSERKRKLKGG 114
>SB_29069| Best HMM Match : Furin-like (HMM E-Value=0.042)
Length = 628
Score = 27.9 bits (59), Expect = 4.9
Identities = 16/44 (36%), Positives = 19/44 (43%)
Frame = +1
Query: 280 WGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRR 411
WG G+ + R GGG R G +G M GG P W R
Sbjct: 24 WGRGQG-GGMGRGPGGGWGRGSGGGWGRMQGGGMGRGPGGGWGR 66
>SB_18582| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 499
Score = 27.9 bits (59), Expect = 4.9
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = -3
Query: 264 LMTGLLADAVGLARVLRH*YVDIIDEVRSDGRLEYKRE 151
+M GL+ VG L H +D+I EV+ + EY ++
Sbjct: 28 VMMGLIGFTVGFIGFLMHQLIDVIAEVKWEKASEYVKD 65
>SB_14427| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 2325
Score = 27.9 bits (59), Expect = 4.9
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = +1
Query: 184 DLVNDVHVSMSKNARQPYCVSKEAGHQTSAESWGTGRAVARI 309
D+ NDV ++++ PY + H T E TG+ +A++
Sbjct: 2034 DVTNDVTINVTDVNEAPYDIRLVPSHVTVKEDIRTGQCIAQV 2075
>SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 550
Score = 27.5 bits (58), Expect = 6.4
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -3
Query: 492 NEGRYPGRCHGGGHGSTSLP*VHATVPAPP 403
++G+ P GGH T +P + +PAPP
Sbjct: 377 SQGQQPAPGRQGGHTLTPVPGLPGALPAPP 406
>SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33)
Length = 392
Score = 27.1 bits (57), Expect = 8.5
Identities = 14/35 (40%), Positives = 15/35 (42%)
Frame = -1
Query: 380 RPPRHMLPNAPCPDLWVPPPRTRGIRATARPVPQD 276
RPP H P PD WVP P R +P D
Sbjct: 250 RPPPHHDMRGP-PDQWVPGPEQRRDNMRGPGMPPD 283
>SB_44477| Best HMM Match : IBR (HMM E-Value=0.00086)
Length = 627
Score = 27.1 bits (57), Expect = 8.5
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Frame = -1
Query: 407 LHGLVGANIR--PPRHMLPNAPCPDLWVPPPRTRGIRATARPVPQ 279
+HGL +I PPRH P P P PPP + + P+ Q
Sbjct: 144 VHGLAHPSITQPPPRHSPPQTPVPP---PPPLPPFAQVSLPPLEQ 185
>SB_621| Best HMM Match : SNF2_N (HMM E-Value=0)
Length = 1432
Score = 27.1 bits (57), Expect = 8.5
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 7/47 (14%)
Frame = -1
Query: 149 GSEAPATTSLFSEYTDTKG-------RATDRLISLYQRSYSSKKHYR 30
GSE P + S+Y+ +K R TD L Y++SY + H+R
Sbjct: 1330 GSEHPRSHERSSDYSRSKDLHPRSYDRGTDHLPRSYEKSYRREDHHR 1376
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,228,024
Number of Sequences: 59808
Number of extensions: 310192
Number of successful extensions: 988
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 919
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 984
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1062812967
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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