Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_B08
(494 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF000196-2|AAC24253.1| 345|Caenorhabditis elegans Ribosomal pro... 158 2e-39
Z70718-11|CAA94680.1| 590|Caenorhabditis elegans Hypothetical p... 31 0.35
Z68301-10|CAA92629.1| 590|Caenorhabditis elegans Hypothetical p... 31 0.35
Z69302-6|CAL36504.1| 472|Caenorhabditis elegans Hypothetical pr... 31 0.61
U13644-9|AAB52680.3| 492|Caenorhabditis elegans Cell death abno... 30 0.80
AF061513-1|AAC24362.1| 492|Caenorhabditis elegans candidate ada... 30 0.80
U41535-6|AAK67248.1| 482|Caenorhabditis elegans Lin-26 related ... 30 1.1
U41535-5|AAK67252.1| 548|Caenorhabditis elegans Lin-26 related ... 30 1.1
AJ130960-1|CAA10264.1| 482|Caenorhabditis elegans LIR-2B protei... 30 1.1
AJ130959-1|CAA10263.1| 548|Caenorhabditis elegans LIR-2A protei... 30 1.1
AL132949-31|CAB61110.3| 297|Caenorhabditis elegans Hypothetical... 29 1.9
U40935-1|AAA81687.1| 1131|Caenorhabditis elegans Hypothetical pr... 28 4.3
Z75536-2|CAA99830.2| 4171|Caenorhabditis elegans Hypothetical pr... 27 5.7
Z75552-8|CAD54158.1| 939|Caenorhabditis elegans Hypothetical pr... 27 7.5
Z75552-7|CAA99943.3| 944|Caenorhabditis elegans Hypothetical pr... 27 7.5
Z75539-5|CAD54134.1| 939|Caenorhabditis elegans Hypothetical pr... 27 7.5
Z75539-4|CAA99846.3| 944|Caenorhabditis elegans Hypothetical pr... 27 7.5
Z73102-2|CAB63428.1| 341|Caenorhabditis elegans Hypothetical pr... 27 7.5
Z73102-1|CAA97419.1| 298|Caenorhabditis elegans Hypothetical pr... 27 7.5
U58748-10|AAB52970.2| 701|Caenorhabditis elegans Hypothetical p... 27 9.9
>AF000196-2|AAC24253.1| 345|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 4 protein.
Length = 345
Score = 158 bits (383), Expect = 2e-39
Identities = 74/110 (67%), Positives = 86/110 (78%)
Frame = +1
Query: 88 ARPLVSVYSEKSEVVAGASLPLPFVFKAPIRPDLVNDVHVSMSKNARQPYCVSKEAGHQT 267
ARPLV+VY EK E + + LP VF+ PIRPDLV+ + + +N RQ + V+ +AG Q
Sbjct: 3 ARPLVTVYDEKYEATQ-SQIRLPAVFRTPIRPDLVSFIADQVRRNRRQAHAVNTKAGKQH 61
Query: 268 SAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWH 417
SAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGG MFAP K +RRWH
Sbjct: 62 SAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGHMFAPLKVFRRWH 111
>Z70718-11|CAA94680.1| 590|Caenorhabditis elegans Hypothetical
protein W01B6.9 protein.
Length = 590
Score = 31.5 bits (68), Expect = 0.35
Identities = 19/39 (48%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = -1
Query: 173 GALNTNGRGSEAPATTSLFSEYT-DTKGRATDRLISLYQ 60
G LN NGR S A T F++YT T R TD SL Q
Sbjct: 9 GGLNLNGRASIAITPTKRFTDYTGSTSVRKTDARPSLSQ 47
>Z68301-10|CAA92629.1| 590|Caenorhabditis elegans Hypothetical
protein W01B6.9 protein.
Length = 590
Score = 31.5 bits (68), Expect = 0.35
Identities = 19/39 (48%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = -1
Query: 173 GALNTNGRGSEAPATTSLFSEYT-DTKGRATDRLISLYQ 60
G LN NGR S A T F++YT T R TD SL Q
Sbjct: 9 GGLNLNGRASIAITPTKRFTDYTGSTSVRKTDARPSLSQ 47
>Z69302-6|CAL36504.1| 472|Caenorhabditis elegans Hypothetical
protein F40F8.11 protein.
Length = 472
Score = 30.7 bits (66), Expect = 0.61
Identities = 22/64 (34%), Positives = 24/64 (37%), Gaps = 3/64 (4%)
Frame = +1
Query: 220 NARQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHR---SGQGAFGNMCRGGRMFA 390
N R V K H+ SW T + R GGG R SG G RGGR
Sbjct: 137 NKRGTKGVQKMPNHRLEGNSWETNGLQNQTARGGGGGRGRGRGSGGRGRGGFNRGGRFNG 196
Query: 391 PTKP 402
KP
Sbjct: 197 APKP 200
>U13644-9|AAB52680.3| 492|Caenorhabditis elegans Cell death
abnormality protein 6 protein.
Length = 492
Score = 30.3 bits (65), Expect = 0.80
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = -1
Query: 185 SGLMGALNTNGRGSEAPATTSLFSEYTDTKGR 90
SG++G N NG GS +P+T++ +Y GR
Sbjct: 14 SGIVGGNNINGEGSSSPSTSAPQVKYRGGTGR 45
>AF061513-1|AAC24362.1| 492|Caenorhabditis elegans candidate
adaptor protein CED-6 protein.
Length = 492
Score = 30.3 bits (65), Expect = 0.80
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = -1
Query: 185 SGLMGALNTNGRGSEAPATTSLFSEYTDTKGR 90
SG++G N NG GS +P+T++ +Y GR
Sbjct: 14 SGIVGGNNINGEGSSSPSTSAPQVKYRGGTGR 45
>U41535-6|AAK67248.1| 482|Caenorhabditis elegans Lin-26 related
protein 2, isoform b protein.
Length = 482
Score = 29.9 bits (64), Expect = 1.1
Identities = 17/48 (35%), Positives = 27/48 (56%)
Frame = +1
Query: 67 SEMSLSVARPLVSVYSEKSEVVAGASLPLPFVFKAPIRPDLVNDVHVS 210
SE+ +S++ P+ S S+ SE A SLP +AP+ L++D S
Sbjct: 108 SEIPISMSSPMESASSKDSEPQAVISLPTLGATRAPLLSKLLSDPSTS 155
>U41535-5|AAK67252.1| 548|Caenorhabditis elegans Lin-26 related
protein 2, isoform a protein.
Length = 548
Score = 29.9 bits (64), Expect = 1.1
Identities = 17/48 (35%), Positives = 27/48 (56%)
Frame = +1
Query: 67 SEMSLSVARPLVSVYSEKSEVVAGASLPLPFVFKAPIRPDLVNDVHVS 210
SE+ +S++ P+ S S+ SE A SLP +AP+ L++D S
Sbjct: 174 SEIPISMSSPMESASSKDSEPQAVISLPTLGATRAPLLSKLLSDPSTS 221
>AJ130960-1|CAA10264.1| 482|Caenorhabditis elegans LIR-2B protein
protein.
Length = 482
Score = 29.9 bits (64), Expect = 1.1
Identities = 17/48 (35%), Positives = 27/48 (56%)
Frame = +1
Query: 67 SEMSLSVARPLVSVYSEKSEVVAGASLPLPFVFKAPIRPDLVNDVHVS 210
SE+ +S++ P+ S S+ SE A SLP +AP+ L++D S
Sbjct: 108 SEIPISMSSPMESASSKDSEPQAVISLPTLGATRAPLLSKLLSDPSTS 155
>AJ130959-1|CAA10263.1| 548|Caenorhabditis elegans LIR-2A protein
protein.
Length = 548
Score = 29.9 bits (64), Expect = 1.1
Identities = 17/48 (35%), Positives = 27/48 (56%)
Frame = +1
Query: 67 SEMSLSVARPLVSVYSEKSEVVAGASLPLPFVFKAPIRPDLVNDVHVS 210
SE+ +S++ P+ S S+ SE A SLP +AP+ L++D S
Sbjct: 174 SEIPISMSSPMESASSKDSEPQAVISLPTLGATRAPLLSKLLSDPSTS 221
>AL132949-31|CAB61110.3| 297|Caenorhabditis elegans Hypothetical
protein Y53F4B.36 protein.
Length = 297
Score = 29.1 bits (62), Expect = 1.9
Identities = 14/58 (24%), Positives = 26/58 (44%)
Frame = +1
Query: 73 MSLSVARPLVSVYSEKSEVVAGASLPLPFVFKAPIRPDLVNDVHVSMSKNARQPYCVS 246
MS++V P +S VV+ + F++ P ++ D H+ + A CV+
Sbjct: 182 MSMAVTSPYLSKLDRLPIVVSACKRAMCFIYDRPTNSIILLDTHMHFKRRAVSVLCVA 239
>U40935-1|AAA81687.1| 1131|Caenorhabditis elegans Hypothetical
protein F31E3.4 protein.
Length = 1131
Score = 27.9 bits (59), Expect = 4.3
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -1
Query: 206 TWTSLTRSGLMGALNTNGRGSEAPATTSLFSEY 108
TW++ M LN+NG +E P TSL S +
Sbjct: 270 TWSNHPAGVKMFDLNSNGNSAEFPIETSLISAF 302
>Z75536-2|CAA99830.2| 4171|Caenorhabditis elegans Hypothetical protein
F18C12.1 protein.
Length = 4171
Score = 27.5 bits (58), Expect = 5.7
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Frame = -1
Query: 230 WRAFFDIDT-WTSLTRSGLMGALNTNGRGSEAPATTSLFSEYTDTKGRATD--RLISLYQ 60
++ FFD + W S+ +G++N G G+ + LFS TD +L S+Y
Sbjct: 2319 YQGFFDHNLEWVSIENIQFVGSMNPIGDGAAVSISNRLFSLLRCVSLNTTDSSQLTSIY- 2377
Query: 59 RSY 51
R+Y
Sbjct: 2378 RTY 2380
>Z75552-8|CAD54158.1| 939|Caenorhabditis elegans Hypothetical
protein F28C1.3b protein.
Length = 939
Score = 27.1 bits (57), Expect = 7.5
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = +1
Query: 82 SVARPLVSV--YSEKSEVVAGASLPLPFVFKAPIRPDLVNDVHVSMSKNARQP 234
SV R L++ Y EKS+V ASL L F P +L+ ++ +S + + P
Sbjct: 803 SVIRDLLNYVEYEEKSQVERKASLLLRNTFSRPNPEELLRNLRLSEATGSTTP 855
>Z75552-7|CAA99943.3| 944|Caenorhabditis elegans Hypothetical
protein F28C1.3a protein.
Length = 944
Score = 27.1 bits (57), Expect = 7.5
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = +1
Query: 82 SVARPLVSV--YSEKSEVVAGASLPLPFVFKAPIRPDLVNDVHVSMSKNARQP 234
SV R L++ Y EKS+V ASL L F P +L+ ++ +S + + P
Sbjct: 808 SVIRDLLNYVEYEEKSQVERKASLLLRNTFSRPNPEELLRNLRLSEATGSTTP 860
>Z75539-5|CAD54134.1| 939|Caenorhabditis elegans Hypothetical
protein F28C1.3b protein.
Length = 939
Score = 27.1 bits (57), Expect = 7.5
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = +1
Query: 82 SVARPLVSV--YSEKSEVVAGASLPLPFVFKAPIRPDLVNDVHVSMSKNARQP 234
SV R L++ Y EKS+V ASL L F P +L+ ++ +S + + P
Sbjct: 803 SVIRDLLNYVEYEEKSQVERKASLLLRNTFSRPNPEELLRNLRLSEATGSTTP 855
>Z75539-4|CAA99846.3| 944|Caenorhabditis elegans Hypothetical
protein F28C1.3a protein.
Length = 944
Score = 27.1 bits (57), Expect = 7.5
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = +1
Query: 82 SVARPLVSV--YSEKSEVVAGASLPLPFVFKAPIRPDLVNDVHVSMSKNARQP 234
SV R L++ Y EKS+V ASL L F P +L+ ++ +S + + P
Sbjct: 808 SVIRDLLNYVEYEEKSQVERKASLLLRNTFSRPNPEELLRNLRLSEATGSTTP 860
>Z73102-2|CAB63428.1| 341|Caenorhabditis elegans Hypothetical
protein B0035.1b protein.
Length = 341
Score = 27.1 bits (57), Expect = 7.5
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -1
Query: 401 GLVGANIRPPRHMLPNAPCPDLWVPPPRTRG 309
G+ GA PP P AP P +++PPP G
Sbjct: 154 GMPGAY--PPPRGYPPAPAPGVYMPPPGMPG 182
>Z73102-1|CAA97419.1| 298|Caenorhabditis elegans Hypothetical
protein B0035.1a protein.
Length = 298
Score = 27.1 bits (57), Expect = 7.5
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -1
Query: 401 GLVGANIRPPRHMLPNAPCPDLWVPPPRTRG 309
G+ GA PP P AP P +++PPP G
Sbjct: 154 GMPGAY--PPPRGYPPAPAPGVYMPPPGMPG 182
>U58748-10|AAB52970.2| 701|Caenorhabditis elegans Hypothetical
protein ZK180.6 protein.
Length = 701
Score = 26.6 bits (56), Expect = 9.9
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = +1
Query: 307 IPRVRGGGTHRSGQGAFGNMCRGG 378
+P GGG S Q A GN C GG
Sbjct: 26 LPGAGGGGCCSSAQPACGNPCGGG 49
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,795,705
Number of Sequences: 27780
Number of extensions: 220145
Number of successful extensions: 771
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 738
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 770
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 935344784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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