Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_B07
         (445 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC691.01 |||palmitoyltransferase |Schizosaccharomyces pombe|ch...    26   2.3  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    25   5.2  
SPBC36.01c |||spermidine family transporter |Schizosaccharomyces...    25   5.2  
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ...    25   6.9  

>SPBC691.01 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 312

 Score = 26.2 bits (55), Expect = 2.3
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -3

Query: 311 LVCVIVIVKLTNGYRNL 261
           L+CV   +K+ NGYRNL
Sbjct: 41  LICVDSNIKIRNGYRNL 57


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 25.0 bits (52), Expect = 5.2
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = +3

Query: 243 DFLIRS*VTISICQFYYYYYTNQWL*SQCV 332
           DF +R  V  ++C  Y + + N+ L   C+
Sbjct: 800 DFFLRCGVDFTVCNRYTHNFNNEHLDEACI 829


>SPBC36.01c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 580

 Score = 25.0 bits (52), Expect = 5.2
 Identities = 7/29 (24%), Positives = 19/29 (65%)
 Frame = +2

Query: 338 ITNLPWLNLAIVIYVASKMNCIIEYF*FR 424
           ++ LP++ + + +++   +NC+ E + FR
Sbjct: 407 VSALPYIGILVGVFIGCGINCLFEPWYFR 435


>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1337

 Score = 24.6 bits (51), Expect = 6.9
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -2

Query: 330  RIVIITIGLCNSNSKIDKW 274
            RI+ IT  LC    +IDKW
Sbjct: 1291 RIMFITKSLCGEIFEIDKW 1309


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,829,949
Number of Sequences: 5004
Number of extensions: 34669
Number of successful extensions: 62
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 162176800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)