Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_B07
         (445 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46909| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=0.00039)          25   4.6  
SB_52928| Best HMM Match : PKD (HMM E-Value=0)                         27   5.3  
SB_2102| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.0  

>SB_46909| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=0.00039)
          Length = 685

 Score = 25.0 bits (52), Expect(2) = 4.6
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +3

Query: 249 LIRS*VTISICQFYYYYY 302
           +I + +  +IC  YYYYY
Sbjct: 511 IITTTIIFTICHHYYYYY 528



 Score = 21.0 bits (42), Expect(2) = 4.6
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = +3

Query: 285 FYYYYYTNQ 311
           +YYYYY  Q
Sbjct: 533 YYYYYYPRQ 541


>SB_52928| Best HMM Match : PKD (HMM E-Value=0)
          Length = 1624

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = +1

Query: 253 SVVKLRYPFVN-FTITITQTNGYDHNAFFDYKSTMVK 360
           S V   YP    +T+T+   N Y H+   +Y +T VK
Sbjct: 739 STVSHSYPLPGEYTVTVRAFNPYSHSVKHEYATTKVK 775


>SB_2102| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2396

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +1

Query: 130 G*AGLNPRPLTRNPAALSTAPSSLCHSS 213
           G  GLN +   +NP+++ST P    HSS
Sbjct: 125 GGIGLNVKSTIKNPSSMSTIPLKQPHSS 152


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,359,249
Number of Sequences: 59808
Number of extensions: 254482
Number of successful extensions: 365
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 322
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 365
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 871599479
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)