Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_B07
         (445 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81117-14|CAB03313.3|  272|Caenorhabditis elegans Hypothetical p...    30   0.87 
Z81083-2|CAB03101.3|  646|Caenorhabditis elegans Hypothetical pr...    28   3.5  
AF016451-1|AAB66002.2|  294|Caenorhabditis elegans Serpentine re...    28   3.5  

>Z81117-14|CAB03313.3|  272|Caenorhabditis elegans Hypothetical
           protein T06E6.3 protein.
          Length = 272

 Score = 29.9 bits (64), Expect = 0.87
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +1

Query: 256 VVKLRYPFVNFTITITQTNGYDHNAFFDYKSTMVKFSNSYL 378
           V +LR PF   T+ +  ++G     +  Y + MV F N YL
Sbjct: 4   VTELRKPFTILTVGLATSDGVFSTLYLFYATPMVFFVNEYL 44


>Z81083-2|CAB03101.3|  646|Caenorhabditis elegans Hypothetical
           protein F44F1.3 protein.
          Length = 646

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = +2

Query: 80  FPYDVFLHRKLRLILEPDRRV*TRVH*RGIQPHYPLRHHRCVIVVSFE 223
           F YD FLH  LR  +  ++ V   +  +      P R H+ ++V++ E
Sbjct: 532 FTYDQFLHAHLRYSITDEQFVSRSLEDKQTVDVIPPRRHQVLVVINLE 579


>AF016451-1|AAB66002.2|  294|Caenorhabditis elegans Serpentine
           receptor, class x protein38 protein.
          Length = 294

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +1

Query: 256 VVKLRYPFVNFTITITQTNGYDHNAFFDYKSTMVKFSNSYL 378
           V KL+ PF   T+ +   +G     +  Y + MV F N +L
Sbjct: 32  VTKLQKPFAILTVGLAIADGVFSTLYLFYATPMVFFQNEFL 72


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,981,344
Number of Sequences: 27780
Number of extensions: 192192
Number of successful extensions: 333
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 328
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 333
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 767282256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)