Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_B07
         (445 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g42460.1 68415.m05253 meprin and TRAF homology domain-contain...    29   1.9  
At5g23310.1 68418.m02727 superoxide dismutase [Fe] / iron supero...    26   10.0 

>At2g42460.1 68415.m05253 meprin and TRAF homology domain-containing
           protein / MATH domain-containing protein weak similarity
           to ubiquitin-specific protease 12 [Arabidopsis thaliana]
           GI:11993471; contains Pfam profile PF00917: MATH domain
          Length = 441

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -3

Query: 182 DSAAGFRVNGRGFKPAYPAL 123
           D A GF++NG+G K AY +L
Sbjct: 342 DIATGFKLNGKGLKTAYMSL 361


>At5g23310.1 68418.m02727 superoxide dismutase [Fe] / iron
           superoxide dismutase 3 (FSD3) identical to iron
           superoxide dismutase 3 [Arabidopsis thaliana]
           gi|3273757|gb|AAC24834
          Length = 263

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +1

Query: 274 PFVNFTITITQTNGYDHNAFFDYKSTMVKFSNSYL 378
           P V   I I   + ++H+ + DYK+   K+ N++L
Sbjct: 199 PLVWDDIPIICVDVWEHSYYLDYKNDRAKYINTFL 233


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,267,864
Number of Sequences: 28952
Number of extensions: 176700
Number of successful extensions: 321
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 319
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 321
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 712739520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)