Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_B05
(483 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr 2|||M... 309 1e-85
SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein Ubi2|... 153 2e-38
SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein Ubi1|Schiz... 153 2e-38
SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein Ubi3|Schi... 152 2e-38
SPAC589.10c |||ribomal-ubiquitin fusion protein Ubi5|Schizosacch... 152 2e-38
SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like pro... 92 5e-20
SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces pomb... 44 2e-05
SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyc... 42 4e-05
SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase Ubp6|Schizosacc... 41 1e-04
SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomy... 27 2.0
SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3 |Schizosa... 25 7.9
SPBC2F12.09c |atf21||transcription factor Atf21|Schizosaccharomy... 25 7.9
SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5 |Sc... 25 7.9
>SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 382
Score = 309 bits (759), Expect = 1e-85
Identities = 150/158 (94%), Positives = 157/158 (99%)
Frame = +2
Query: 8 VTLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 187
+TLEVE SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR
Sbjct: 13 ITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 72
Query: 188 LRGGMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 367
LRGGMQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL
Sbjct: 73 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTL 132
Query: 368 SDYNIQKESTLHLVLRLRGGMQIFVRTLTGKTITLEVE 481
SDYNIQKESTLHLVLRLRGGMQIFV+TLTGKTITLEVE
Sbjct: 133 SDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE 170
Score = 309 bits (759), Expect = 1e-85
Identities = 150/158 (94%), Positives = 157/158 (99%)
Frame = +2
Query: 8 VTLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 187
+TLEVE SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR
Sbjct: 89 ITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 148
Query: 188 LRGGMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 367
LRGGMQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL
Sbjct: 149 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTL 208
Query: 368 SDYNIQKESTLHLVLRLRGGMQIFVRTLTGKTITLEVE 481
SDYNIQKESTLHLVLRLRGGMQIFV+TLTGKTITLEVE
Sbjct: 209 SDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE 246
Score = 309 bits (759), Expect = 1e-85
Identities = 150/158 (94%), Positives = 157/158 (99%)
Frame = +2
Query: 8 VTLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 187
+TLEVE SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR
Sbjct: 165 ITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 224
Query: 188 LRGGMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 367
LRGGMQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL
Sbjct: 225 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTL 284
Query: 368 SDYNIQKESTLHLVLRLRGGMQIFVRTLTGKTITLEVE 481
SDYNIQKESTLHLVLRLRGGMQIFV+TLTGKTITLEVE
Sbjct: 285 SDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE 322
Score = 277 bits (678), Expect = 8e-76
Identities = 133/141 (94%), Positives = 140/141 (99%)
Frame = +2
Query: 8 VTLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 187
+TLEVE SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR
Sbjct: 241 ITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 300
Query: 188 LRGGMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 367
LRGGMQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL
Sbjct: 301 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTL 360
Query: 368 SDYNIQKESTLHLVLRLRGGM 430
SDYNIQKESTLHLVLRLRGG+
Sbjct: 361 SDYNIQKESTLHLVLRLRGGL 381
Score = 186 bits (452), Expect = 2e-48
Identities = 90/94 (95%), Positives = 94/94 (100%)
Frame = +2
Query: 200 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 379
MQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 380 IQKESTLHLVLRLRGGMQIFVRTLTGKTITLEVE 481
IQKESTLHLVLRLRGGMQIFV+TLTGKTITLEVE
Sbjct: 61 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE 94
>SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein
Ubi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 153 bits (370), Expect = 2e-38
Identities = 73/77 (94%), Positives = 77/77 (100%)
Frame = +2
Query: 200 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 379
MQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 380 IQKESTLHLVLRLRGGM 430
IQKESTLHLVLRLRGG+
Sbjct: 61 IQKESTLHLVLRLRGGI 77
Score = 128 bits (309), Expect = 4e-31
Identities = 63/76 (82%), Positives = 69/76 (90%), Gaps = 1/76 (1%)
Frame = +2
Query: 8 VTLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 187
+TLEVE SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR
Sbjct: 13 ITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 72
Query: 188 LRGG-MQIFVKTLTGK 232
LRGG ++ +K L K
Sbjct: 73 LRGGIIEPSLKALASK 88
Score = 37.5 bits (83), Expect = 0.001
Identities = 17/18 (94%), Positives = 18/18 (100%)
Frame = +2
Query: 428 MQIFVRTLTGKTITLEVE 481
MQIFV+TLTGKTITLEVE
Sbjct: 1 MQIFVKTLTGKTITLEVE 18
>SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein
Ubi1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 153 bits (370), Expect = 2e-38
Identities = 73/77 (94%), Positives = 77/77 (100%)
Frame = +2
Query: 200 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 379
MQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 380 IQKESTLHLVLRLRGGM 430
IQKESTLHLVLRLRGG+
Sbjct: 61 IQKESTLHLVLRLRGGI 77
Score = 128 bits (309), Expect = 4e-31
Identities = 63/76 (82%), Positives = 69/76 (90%), Gaps = 1/76 (1%)
Frame = +2
Query: 8 VTLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 187
+TLEVE SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR
Sbjct: 13 ITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 72
Query: 188 LRGG-MQIFVKTLTGK 232
LRGG ++ +K L K
Sbjct: 73 LRGGIIEPSLKALASK 88
Score = 37.5 bits (83), Expect = 0.001
Identities = 17/18 (94%), Positives = 18/18 (100%)
Frame = +2
Query: 428 MQIFVRTLTGKTITLEVE 481
MQIFV+TLTGKTITLEVE
Sbjct: 1 MQIFVKTLTGKTITLEVE 18
>SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein
Ubi3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 152 bits (369), Expect = 2e-38
Identities = 73/76 (96%), Positives = 76/76 (100%)
Frame = +2
Query: 200 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 379
MQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 380 IQKESTLHLVLRLRGG 427
IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
Score = 127 bits (307), Expect = 8e-31
Identities = 60/64 (93%), Positives = 63/64 (98%)
Frame = +2
Query: 8 VTLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 187
+TLEVE SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR
Sbjct: 13 ITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 72
Query: 188 LRGG 199
LRGG
Sbjct: 73 LRGG 76
Score = 37.5 bits (83), Expect = 0.001
Identities = 17/18 (94%), Positives = 18/18 (100%)
Frame = +2
Query: 428 MQIFVRTLTGKTITLEVE 481
MQIFV+TLTGKTITLEVE
Sbjct: 1 MQIFVKTLTGKTITLEVE 18
>SPAC589.10c |||ribomal-ubiquitin fusion protein
Ubi5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 152 bits (369), Expect = 2e-38
Identities = 73/76 (96%), Positives = 76/76 (100%)
Frame = +2
Query: 200 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 379
MQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 380 IQKESTLHLVLRLRGG 427
IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
Score = 127 bits (307), Expect = 8e-31
Identities = 60/64 (93%), Positives = 63/64 (98%)
Frame = +2
Query: 8 VTLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 187
+TLEVE SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR
Sbjct: 13 ITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 72
Query: 188 LRGG 199
LRGG
Sbjct: 73 LRGG 76
Score = 37.5 bits (83), Expect = 0.001
Identities = 17/18 (94%), Positives = 18/18 (100%)
Frame = +2
Query: 428 MQIFVRTLTGKTITLEVE 481
MQIFV+TLTGKTITLEVE
Sbjct: 1 MQIFVKTLTGKTITLEVE 18
>SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like
protein modifier Ned8|Schizosaccharomyces pombe|chr
2|||Manual
Length = 78
Score = 91.9 bits (218), Expect = 5e-20
Identities = 40/76 (52%), Positives = 56/76 (73%)
Frame = +2
Query: 200 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 379
M I VKTLTGK I L+++ +D + +K ++++KEGIPP QQRLI+AGKQ+ D + Y+
Sbjct: 1 MLIKVKTLTGKEIELDIDPNDKVSRIKERVEEKEGIPPSQQRLIYAGKQMADDKNAESYH 60
Query: 380 IQKESTLHLVLRLRGG 427
++ S LHLVL LRGG
Sbjct: 61 LEGGSVLHLVLALRGG 76
Score = 81.8 bits (193), Expect = 5e-17
Identities = 32/65 (49%), Positives = 49/65 (75%)
Frame = +2
Query: 5 EVTLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 184
E+ L+++P+D + +K ++++KEGIPP QQRLI+AGKQ+ D + Y+++ S LHLVL
Sbjct: 12 EIELDIDPNDKVSRIKERVEEKEGIPPSQQRLIYAGKQMADDKNAESYHLEGGSVLHLVL 71
Query: 185 RLRGG 199
LRGG
Sbjct: 72 ALRGG 76
>SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 368
Score = 43.6 bits (98), Expect = 2e-05
Identities = 18/54 (33%), Positives = 35/54 (64%)
Frame = +2
Query: 230 KTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKE 391
K + +V A I +K KIQ ++ ++Q+LI++G+ L D +T+ +YNI+++
Sbjct: 12 KFVISDVSADTKISELKEKIQTQQNYEVERQKLIYSGRILADDKTVGEYNIKEQ 65
Score = 40.7 bits (91), Expect = 1e-04
Identities = 17/52 (32%), Positives = 33/52 (63%)
Frame = +2
Query: 8 VTLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKE 163
V +V I +K KIQ ++ ++Q+LI++G+ L D +T+ +YNI+++
Sbjct: 14 VISDVSADTKISELKEKIQTQQNYEVERQKLIYSGRILADDKTVGEYNIKEQ 65
>SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 354
Score = 42.3 bits (95), Expect = 4e-05
Identities = 21/73 (28%), Positives = 39/73 (53%)
Frame = +2
Query: 200 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 379
+ + +K + + V++ ++ +K I I ++QRLI+AG+ L+D +L Y
Sbjct: 4 ISLTIKAANDQKYAVTVDSESSVLALKEAIAPVADIEKERQRLIYAGRVLKDEESLKTYK 63
Query: 380 IQKESTLHLVLRL 418
IQ ++HLV L
Sbjct: 64 IQDGHSIHLVKTL 76
Score = 39.1 bits (87), Expect = 3e-04
Identities = 20/57 (35%), Positives = 32/57 (56%)
Frame = +2
Query: 20 VEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 190
V+ ++ +K I I ++QRLI+AG+ L+D +L Y IQ ++HLV L
Sbjct: 20 VDSESSVLALKEAIAPVADIEKERQRLIYAGRVLKDEESLKTYKIQDGHSIHLVKTL 76
>SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase
Ubp6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 467
Score = 40.7 bits (91), Expect = 1e-04
Identities = 19/58 (32%), Positives = 33/58 (56%)
Frame = +2
Query: 227 GKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTL 400
GK LE+E ++T +K ++ +PP++Q++I G QL+D L I+ +TL
Sbjct: 10 GKKYDLEIEPNETGSTLKHQLYSLTQVPPERQKVIVKGGQLKDDVLLGSVGIKPNATL 67
Score = 40.7 bits (91), Expect = 1e-04
Identities = 18/53 (33%), Positives = 32/53 (60%)
Frame = +2
Query: 14 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTL 172
LE+EP++T +K ++ +PP++Q++I G QL+D L I+ +TL
Sbjct: 15 LEIEPNETGSTLKHQLYSLTQVPPERQKVIVKGGQLKDDVLLGSVGIKPNATL 67
>SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 603
Score = 26.6 bits (56), Expect = 2.0
Identities = 21/90 (23%), Positives = 40/90 (44%), Gaps = 2/90 (2%)
Frame = +2
Query: 203 QIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD--Y 376
+I V T+ K +V + T+ +K I P D+ +LI AG+ L + L + +
Sbjct: 5 RIRVTTVDQKVGIFQVPRTKTVLELKELIAVTFEAPADRLKLIHAGRVLRNETPLEEILH 64
Query: 377 NIQKESTLHLVLRLRGGMQIFVRTLTGKTI 466
+ T HLV+ + + + T ++
Sbjct: 65 DATDLVTFHLVIAVFNSTSTTLPSATSSSV 94
>SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1029
Score = 24.6 bits (51), Expect = 7.9
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -3
Query: 208 NLHTTAQA*DQVKCRFFLNVVIGK 137
N H AQ ++++C FL ++IGK
Sbjct: 751 NTHAYAQDVERLRCYEFLGMLIGK 774
>SPBC2F12.09c |atf21||transcription factor Atf21|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 355
Score = 24.6 bits (51), Expect = 7.9
Identities = 18/64 (28%), Positives = 25/64 (39%), Gaps = 3/64 (4%)
Frame = +2
Query: 221 LTGKTITLEVEASDTIENVKAKIQDKEGIP---PDQQRLIFAGKQLEDGRTLSDYNIQKE 391
L G T EV T+ + + +G P P + I A +G TL+ YN
Sbjct: 94 LKGPERTSEVSLPQTVNLSEISNNNDKGQPTNTPPVRSTIVAPSLYSEGSTLNHYNNGSH 153
Query: 392 STLH 403
LH
Sbjct: 154 QVLH 157
>SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 632
Score = 24.6 bits (51), Expect = 7.9
Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +2
Query: 125 DGRTLSDYNIQKESTLHLVLRLR-GGMQIFVKTLTGKTITL 244
DG TL++ N HL++RL+ ++ + +T+TL
Sbjct: 432 DGETLNEINTNNPEREHLIVRLKVDSQKLKIIVEQSQTLTL 472
Score = 24.6 bits (51), Expect = 7.9
Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +2
Query: 353 DGRTLSDYNIQKESTLHLVLRLR-GGMQIFVRTLTGKTITL 472
DG TL++ N HL++RL+ ++ + +T+TL
Sbjct: 432 DGETLNEINTNNPEREHLIVRLKVDSQKLKIIVEQSQTLTL 472
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,705,903
Number of Sequences: 5004
Number of extensions: 30068
Number of successful extensions: 89
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 186042952
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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