Samia BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_B05
         (483 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L36067-1|AAA29362.1|  229|Anopheles gambiae polyubiquitin protein.    316   2e-88
CR954257-6|CAJ14157.1|  375|Anopheles gambiae RrnaAD, ribosomal ...    24   3.1  
AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.    23   5.5  

>L36067-1|AAA29362.1|  229|Anopheles gambiae polyubiquitin protein.
          Length = 229

 Score =  316 bits (777), Expect = 2e-88
 Identities = 155/158 (98%), Positives = 157/158 (99%)
 Frame = +2

Query: 8   VTLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 187
           +TLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR
Sbjct: 13  ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 72

Query: 188 LRGGMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 367
           LRGGMQIFVKTLTGKTITLEVE SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL
Sbjct: 73  LRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 132

Query: 368 SDYNIQKESTLHLVLRLRGGMQIFVRTLTGKTITLEVE 481
           SDYNIQKESTLHLVLRLRGGMQIFV+TLTGKTITLEVE
Sbjct: 133 SDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE 170



 Score =  283 bits (694), Expect = 2e-78
 Identities = 138/140 (98%), Positives = 139/140 (99%)
 Frame = +2

Query: 8   VTLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 187
           +TLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR
Sbjct: 89  ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 148

Query: 188 LRGGMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 367
           LRGGMQIFVKTLTGKTITLEVE SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL
Sbjct: 149 LRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 208

Query: 368 SDYNIQKESTLHLVLRLRGG 427
           SDYNIQKESTLHLVLRLRGG
Sbjct: 209 SDYNIQKESTLHLVLRLRGG 228



 Score =  187 bits (456), Expect = 2e-49
 Identities = 92/94 (97%), Positives = 93/94 (98%)
 Frame = +2

Query: 200 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 379
           MQIFVKTLTGKTITLEVE SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 380 IQKESTLHLVLRLRGGMQIFVRTLTGKTITLEVE 481
           IQKESTLHLVLRLRGGMQIFV+TLTGKTITLEVE
Sbjct: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE 94


>CR954257-6|CAJ14157.1|  375|Anopheles gambiae RrnaAD, ribosomal RNA
           adenine dimethylaseprotein.
          Length = 375

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
 Frame = +1

Query: 163 IYTSPG-LTPARWYADFRQNFNWQNYH 240
           I+T  G LTPA+    F +  NW  +H
Sbjct: 303 IFTEFGELTPAQVLTLFNEFINWSEFH 329


>AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.
          Length = 1133

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = +2

Query: 68  KEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 190
           K   P  Q R IF G+ +++   +    +Q++   HL++ L
Sbjct: 588 KREFPDLQNRTIFTGRFVKELYDVRSGCVQEQDGTHLLMNL 628



 Score = 23.0 bits (47), Expect = 5.5
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = +2

Query: 296 KEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 418
           K   P  Q R IF G+ +++   +    +Q++   HL++ L
Sbjct: 588 KREFPDLQNRTIFTGRFVKELYDVRSGCVQEQDGTHLLMNL 628


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 434,986
Number of Sequences: 2352
Number of extensions: 7590
Number of successful extensions: 12
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 563,979
effective HSP length: 60
effective length of database: 422,859
effective search space used: 42285900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)