Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_B04
(439 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC839.05c |rps1701|rps17-1|40S ribosomal protein S17|Schizosac... 92 3e-20
SPCC24B10.09 |rps1702|rps17-2, rps17|40S ribosomal protein S17|S... 92 3e-20
SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1 |Sc... 29 0.24
SPAC19A8.08 |upf2||nonsense-mediated decay protein Upf2|Schizosa... 28 0.55
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos... 28 0.55
SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr 1|... 27 1.3
SPCC576.13 |swc5||chromatin remodeling complex subunit Swc5|Schi... 26 2.9
SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyc... 25 3.9
SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr... 25 3.9
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc... 25 6.7
SPAC12G12.12 |||NST UDP-galactose transporter|Schizosaccharomyce... 25 6.7
SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomy... 24 8.9
>SPBC839.05c |rps1701|rps17-1|40S ribosomal protein
S17|Schizosaccharomyces pombe|chr 2|||Manual
Length = 131
Score = 92.3 bits (219), Expect = 3e-20
Identities = 45/74 (60%), Positives = 51/74 (68%)
Frame = +2
Query: 8 GRVRTXXXXXXXXXXXXXYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFTTHLMRRL 187
GRVRT YY RLTLDF TNKRI +E+AII +K LRNKIAG+TTHLM+R+
Sbjct: 2 GRVRTKTTKRASRVVIEKYYPRLTLDFQTNKRIVDEVAIIASKRLRNKIAGYTTHLMKRI 61
Query: 188 IHSQVRGISIKLQE 229
VRGIS KLQE
Sbjct: 62 QRGPVRGISFKLQE 75
Score = 60.5 bits (140), Expect = 1e-10
Identities = 33/64 (51%), Positives = 43/64 (67%), Gaps = 2/64 (3%)
Frame = +3
Query: 216 LSFK--KEERERRDNYVPEVSALEQDIIEVDSDTKDMLKMLDFSNINGLQLTQPATQGGY 389
+SFK +EERER+D YVPEVS LE D + VD DTKDMLK L + I +++ PA Q +
Sbjct: 69 ISFKLQEEERERKDQYVPEVSELEVDRVNVDQDTKDMLKSLGYDQI-PVRVLAPAPQERF 127
Query: 390 GGRR 401
R+
Sbjct: 128 RRRQ 131
>SPCC24B10.09 |rps1702|rps17-2, rps17|40S ribosomal protein
S17|Schizosaccharomyces pombe|chr 3|||Manual
Length = 132
Score = 92.3 bits (219), Expect = 3e-20
Identities = 45/74 (60%), Positives = 51/74 (68%)
Frame = +2
Query: 8 GRVRTXXXXXXXXXXXXXYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFTTHLMRRL 187
GRVRT YY RLTLDF TNKRI +E+AII +K LRNKIAG+TTHLM+R+
Sbjct: 2 GRVRTKTTKRASRVVIEKYYPRLTLDFQTNKRIVDEVAIIASKRLRNKIAGYTTHLMKRI 61
Query: 188 IHSQVRGISIKLQE 229
VRGIS KLQE
Sbjct: 62 QRGPVRGISFKLQE 75
Score = 60.9 bits (141), Expect = 8e-11
Identities = 30/46 (65%), Positives = 36/46 (78%), Gaps = 2/46 (4%)
Frame = +3
Query: 216 LSFK--KEERERRDNYVPEVSALEQDIIEVDSDTKDMLKMLDFSNI 347
+SFK +EERER+D YVPEVS LE+D I VD DTKDMLK L + +I
Sbjct: 69 ISFKLQEEERERKDQYVPEVSELEKDKINVDQDTKDMLKALGYDSI 114
>SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 762
Score = 29.5 bits (63), Expect = 0.24
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = -1
Query: 220 LNRDSSHLGVYETSHQMGGEPSNFVAKRLSRNDSNFLTYPFIGIE 86
+NR +L + + ++ G FV + LS+ND NF+ P +G E
Sbjct: 228 MNRPQRYLTI--SKQRLAGSDPYFV-RSLSKNDKNFIMIPTVGYE 269
>SPAC19A8.08 |upf2||nonsense-mediated decay protein
Upf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1049
Score = 28.3 bits (60), Expect = 0.55
Identities = 19/63 (30%), Positives = 32/63 (50%)
Frame = +3
Query: 108 VRKLLSFLLSLFATKLLGSPPI**DVSYTPRCEESLLSFKKEERERRDNYVPEVSALEQD 287
VR LL FL+ + ++G+P VSY P + + F+K E ++ P V L D
Sbjct: 161 VRPLLRFLIEFWLNGVVGTPED--FVSYLPSTDSNDKKFRKPWFEEQNLKKPLVVLLFND 218
Query: 288 IIE 296
+++
Sbjct: 219 LMD 221
>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
Length = 872
Score = 28.3 bits (60), Expect = 0.55
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
Frame = -1
Query: 205 SHLGVYETSHQMGGEPSNFVAKRLSRNDSNFLTYPFIGIE----VKSKPSVVFF 56
SH+ + +T+ + G P V KR+ D N L + IE +KS P VV +
Sbjct: 37 SHVYLVQTNSKTDGSPITAVLKRMYSPDENALRFVKTEIETMELLKSNPHVVSY 90
>SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 785
Score = 27.1 bits (57), Expect = 1.3
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 12/57 (21%)
Frame = +3
Query: 228 KEERERRDNYV------PEVSALEQDIIE------VDSDTKDMLKMLDFSNINGLQL 362
+EE+ER NY+ P +S +E +++ +++ + M+D SN GLQL
Sbjct: 265 EEEKERSKNYLFTKIASPLLSVVEDELLSKHLDDLLENQSTGFFSMIDSSNFEGLQL 321
>SPCC576.13 |swc5||chromatin remodeling complex subunit
Swc5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 215
Score = 25.8 bits (54), Expect = 2.9
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = +3
Query: 225 KKEERERRDNYVPEVSALEQDIIE--VDSDTKDMLKMLDFSNIN 350
KK +RER D +P+ S E + IE V S T+ LK + + N
Sbjct: 72 KKNKRERNDKLIPQQSN-ESEAIEKPVQSTTEVELKTNELAESN 114
>SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1050
Score = 25.4 bits (53), Expect = 3.9
Identities = 7/22 (31%), Positives = 17/22 (77%)
Frame = -3
Query: 437 LLLFVFYNISLITSATVASLCS 372
L+LF+ Y + + TS +++++C+
Sbjct: 114 LMLFISYAVGIFTSLSISAICT 135
>SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 633
Score = 25.4 bits (53), Expect = 3.9
Identities = 13/23 (56%), Positives = 13/23 (56%)
Frame = -1
Query: 184 TSHQMGGEPSNFVAKRLSRNDSN 116
TS MGG PS F LSRN N
Sbjct: 455 TSSIMGGNPSLFNGSVLSRNSVN 477
>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1233
Score = 24.6 bits (51), Expect = 6.7
Identities = 14/48 (29%), Positives = 28/48 (58%)
Frame = +3
Query: 207 ESLLSFKKEERERRDNYVPEVSALEQDIIEVDSDTKDMLKMLDFSNIN 350
E + F ++++E DNY ALE ++ +++ ++LK DF++ N
Sbjct: 841 ERMHKFIEKDQESIDNYEQNREALESEVATAEAEL-ELLKE-DFASEN 886
>SPAC12G12.12 |||NST UDP-galactose transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 324
Score = 24.6 bits (51), Expect = 6.7
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = +3
Query: 69 LGLLLTSIPIKGYVRKLLSFLLSLFATKLL 158
+GLL TS I R L ++LFAT LL
Sbjct: 94 VGLLYTSASIYQMTRGSLIIFVALFATTLL 123
>SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 245
Score = 24.2 bits (50), Expect = 8.9
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +2
Query: 113 EIAIIPTKPLRNKIAGFTTHLMRRLIHSQVR 205
EIA++ TKP + I G RL S++R
Sbjct: 209 EIAVVSTKPTDSGIVGVPGGHFCRLSQSEIR 239
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,662,152
Number of Sequences: 5004
Number of extensions: 30943
Number of successful extensions: 112
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 158122380
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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