Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_B04
(439 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_07_0174 + 13815478-13815903 95 2e-20
03_01_0066 - 537729-538163 93 7e-20
06_01_1138 - 9429447-9433868 31 0.31
02_04_0449 + 23010099-23010317,23010873-23010934,23011399-230114... 29 1.2
05_04_0273 + 19632430-19632762,19633109-19633177,19633318-196333... 29 2.2
06_03_1207 + 28418473-28421073 28 2.9
12_02_0534 - 20103908-20105897,20106314-20107116 27 6.6
01_01_0509 - 3713109-3713244,3713689-3713733,3713959-3714015,371... 27 6.6
06_01_0587 - 4211917-4212021,4212250-4212478,4213426-4213759,421... 27 8.7
04_03_0037 - 9991176-9991268,9991403-9991474,9991569-9991928,999... 27 8.7
>10_07_0174 + 13815478-13815903
Length = 141
Score = 95.1 bits (226), Expect = 2e-20
Identities = 43/74 (58%), Positives = 54/74 (72%)
Frame = +2
Query: 8 GRVRTXXXXXXXXXXXXXYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFTTHLMRRL 187
GRVRT YY+R+TLDF TNK++ EE++I+P+K LRNK+AGFTTHLMRR+
Sbjct: 2 GRVRTKTVKKTSRQVIEKYYSRMTLDFHTNKKVLEEVSILPSKRLRNKVAGFTTHLMRRI 61
Query: 188 IHSQVRGISIKLQE 229
VRGIS+KLQE
Sbjct: 62 QRGPVRGISLKLQE 75
Score = 49.2 bits (112), Expect = 1e-06
Identities = 24/58 (41%), Positives = 37/58 (63%)
Frame = +3
Query: 216 LSFKKEERERRDNYVPEVSALEQDIIEVDSDTKDMLKMLDFSNINGLQLTQPATQGGY 389
L ++EERERR ++VPE SALE + I VD +T +ML L +++ G++ Q + Y
Sbjct: 71 LKLQEEERERRMDFVPEKSALEVEEIRVDKETMEMLAALGMADLPGVERQQEVSAPTY 128
>03_01_0066 - 537729-538163
Length = 144
Score = 93.5 bits (222), Expect = 7e-20
Identities = 42/74 (56%), Positives = 54/74 (72%)
Frame = +2
Query: 8 GRVRTXXXXXXXXXXXXXYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFTTHLMRRL 187
GRVRT YY+R+TLDF TNK++ EE++I+P+K LRNK+AGF+THLMRR+
Sbjct: 2 GRVRTKTVKKTSRQVIEKYYSRMTLDFHTNKKVLEEVSILPSKRLRNKVAGFSTHLMRRI 61
Query: 188 IHSQVRGISIKLQE 229
VRGIS+KLQE
Sbjct: 62 QRGPVRGISLKLQE 75
Score = 48.4 bits (110), Expect = 2e-06
Identities = 25/52 (48%), Positives = 36/52 (69%)
Frame = +3
Query: 216 LSFKKEERERRDNYVPEVSALEQDIIEVDSDTKDMLKMLDFSNINGLQLTQP 371
L ++EERERR ++VP+ SALE D I VD +T DML L +++ G+ + QP
Sbjct: 71 LKLQEEERERRMDFVPDRSALEVDDIRVDKETLDMLTSLGMADLPGV-VRQP 121
>06_01_1138 - 9429447-9433868
Length = 1473
Score = 31.5 bits (68), Expect = 0.31
Identities = 18/51 (35%), Positives = 27/51 (52%)
Frame = +3
Query: 204 EESLLSFKKEERERRDNYVPEVSALEQDIIEVDSDTKDMLKMLDFSNINGL 356
E LL+FKK E E+ N+V E + I E ++ K +L +N+N L
Sbjct: 1235 ESRLLTFKKGEFEQLKNFVVEGPNMTDIIFEKEAAPKLQKIVLSLTNVNSL 1285
>02_04_0449 +
23010099-23010317,23010873-23010934,23011399-23011450,
23011803-23011917,23012024-23012118,23012852-23012958,
23013042-23013156,23014159-23014203,23014324-23014392
Length = 292
Score = 29.5 bits (63), Expect = 1.2
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = -1
Query: 370 GCVSCRPLMLLKSSIFNISLVSESTSMISCSSA 272
GC + +K+ +F+I LVSE S+I+C A
Sbjct: 148 GCGNAAVSKNVKNKVFSIDLVSEDPSVIACDMA 180
>05_04_0273 +
19632430-19632762,19633109-19633177,19633318-19633374,
19633534-19633597,19633887-19634102,19634761-19634803,
19635267-19635345,19635467-19635559
Length = 317
Score = 28.7 bits (61), Expect = 2.2
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
Frame = -1
Query: 223 KLNRDSSHLGVYET----SHQMGGEPSNFVAKRLSRNDSNFLTYPFIGIEVKSKPSVVFF 56
+LNRD + L V++ S Q +P+N K SNF + +G+ +P V
Sbjct: 127 RLNRDVAKLEVFKKTLMQSLQEDEDPANTTPKARVSETSNFSSATSVGVPRPPRPHVFLP 186
Query: 55 DYN 47
YN
Sbjct: 187 SYN 189
>06_03_1207 + 28418473-28421073
Length = 866
Score = 28.3 bits (60), Expect = 2.9
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = -2
Query: 222 SLIEIPRTWECMRRLIKWVVNPAILLRRGLV 130
+LIE+ TW+ + R++K +NP + L+
Sbjct: 677 NLIELDITWQLLERMVKHGLNPTVTTYSSLI 707
>12_02_0534 - 20103908-20105897,20106314-20107116
Length = 930
Score = 27.1 bits (57), Expect = 6.6
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +3
Query: 228 KEERERRDNYVPEVSALEQDIIEVDSDTKDMLK 326
K+ ERRD Y+ + +A +++VDS + M +
Sbjct: 124 KKVSERRDRYIVDDNAARPTVVDVDSRLEAMYR 156
>01_01_0509 -
3713109-3713244,3713689-3713733,3713959-3714015,
3714088-3714438,3714585-3714862,3714939-3715289,
3715378-3715647,3716035-3716103,3716194-3716304,
3716503-3716583,3716825-3716914,3717032-3717262
Length = 689
Score = 27.1 bits (57), Expect = 6.6
Identities = 15/37 (40%), Positives = 24/37 (64%), Gaps = 4/37 (10%)
Frame = +3
Query: 300 DSDTK---DMLKMLDFSNIN-GLQLTQPATQGGYGGR 398
D D+K D++K+L+ +N + QL ++GGYGGR
Sbjct: 530 DQDSKYASDLVKILEGANQSVSQQLRDMVSRGGYGGR 566
>06_01_0587 -
4211917-4212021,4212250-4212478,4213426-4213759,
4215116-4215186,4215374-4215493,4216353-4216771,
4216885-4217336,4217434-4217812
Length = 702
Score = 26.6 bits (56), Expect = 8.7
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +3
Query: 306 DTKDMLKMLDFSNINGLQLTQPATQ 380
DTKDMLK +D+ + G +T +Q
Sbjct: 597 DTKDMLKNVDWKTVGGGSVTTDPSQ 621
>04_03_0037 -
9991176-9991268,9991403-9991474,9991569-9991928,
9992466-9992555,9992692-9992782,9993530-9993729,
9998024-9998101,9998196-9998312,10000017-10000112,
10000192-10000317,10000533-10000629,10000979-10001023,
10002106-10002179,10002267-10002350,10002439-10002522,
10002660-10002851,10003775-10003903,10004061-10004093,
10004190-10004286,10004833-10004883,10005211-10005289,
10005480-10005552,10005595-10005691,10006392-10006473,
10008345-10008691,10010271-10010535,10010624-10010743,
10010971-10011358
Length = 1219
Score = 26.6 bits (56), Expect = 8.7
Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
Frame = +3
Query: 246 RDNYVPEVSALEQDIIEVDSDTKDMLKM----LDFSNINGLQL 362
++ + +V LEQD++ D+ TK+++ LD S N L+L
Sbjct: 789 KEQQLKDVGQLEQDLVFGDAGTKELINFFRTHLDISRENKLRL 831
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,319,284
Number of Sequences: 37544
Number of extensions: 187877
Number of successful extensions: 466
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 460
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 466
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 823860276
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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