Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_B04
         (439 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42700| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.3  
SB_27572| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.1e-19)        28   2.9  
SB_52197| Best HMM Match : TPR_2 (HMM E-Value=6.6e-10)                 28   3.9  
SB_3145| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   5.1  
SB_18018| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.8  

>SB_42700| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 201

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 17/38 (44%), Positives = 24/38 (63%)
 Frame = +3

Query: 183 VSYTPRCEESLLSFKKEERERRDNYVPEVSALEQDIIE 296
           V+Y  R +E L S KK    RRD  V E++ LE+DI++
Sbjct: 165 VNYPDRIDEILDSIKK----RRDECVKELALLEKDILQ 198


>SB_27572| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.1e-19)
          Length = 3107

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 15/63 (23%), Positives = 33/63 (52%)
 Frame = +3

Query: 216 LSFKKEERERRDNYVPEVSALEQDIIEVDSDTKDMLKMLDFSNINGLQLTQPATQGGYGG 395
           + +K + ++  D    + +  E DI+ + ++TK+  K++   N+NG  +   + + G   
Sbjct: 209 MEYKLKMKDYADKKAADSNIQEGDIVVMRNETKEKYKVI---NLNGPDMIVQSKENGSTV 265

Query: 396 RRN 404
           RRN
Sbjct: 266 RRN 268


>SB_52197| Best HMM Match : TPR_2 (HMM E-Value=6.6e-10)
          Length = 536

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = +3

Query: 201 CEESLLSFKKEERERRDNYVPEVSALEQDIIEVDSDTKDMLK 326
           CE  L +  +++RE ++   P+     Q ++E D+D  D LK
Sbjct: 89  CE--LFNLMRQQREEQERLGPDSGLANQVLLEEDADKLDQLK 128


>SB_3145| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1125

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +3

Query: 198 RCEESLLSFKKEERERRDNYVPEVSALEQDIIEVDSD 308
           RC + L  F  E R++ +   P++  LEQ   ++D D
Sbjct: 445 RCLKQLSDFTNELRDQENKLFPKIEQLEQVQKQLDKD 481


>SB_18018| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1040

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = +2

Query: 62  YYTRLTLDFDTNKRICEEIAIIPTKPLRNK 151
           YY++LT D+D+ K    EI I+P+ P+  K
Sbjct: 14  YYSKLTHDYDSGKLQSPEI-ILPSVPVVTK 42


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,251,011
Number of Sequences: 59808
Number of extensions: 224244
Number of successful extensions: 574
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 484
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 570
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 847047381
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)