Samia BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_B04
         (439 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF164153-1|AAD47077.1|  131|Anopheles gambiae ribosomal protein ...   114   1e-27
AB097148-2|BAC82628.1| 1077|Anopheles gambiae pol-like protein p...    24   2.7  
AF444783-1|AAL37904.1| 1356|Anopheles gambiae Trex protein.            23   4.8  
EF588468-1|ABQ96704.1|  176|Anopheles gambiae transposase protein.     22   8.3  

>AF164153-1|AAD47077.1|  131|Anopheles gambiae ribosomal protein S17
           protein.
          Length = 131

 Score =  114 bits (274), Expect = 1e-27
 Identities = 55/74 (74%), Positives = 58/74 (78%)
 Frame = +2

Query: 8   GRVRTXXXXXXXXXXXXXYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFTTHLMRRL 187
           GRVRT             YYTRLT+DFDTNKRI EE+AIIPTKPLRNKIAGF THLM+RL
Sbjct: 2   GRVRTKTIKKASKVIIEKYYTRLTMDFDTNKRIVEEVAIIPTKPLRNKIAGFVTHLMKRL 61

Query: 188 IHSQVRGISIKLQE 229
            HSQVRGISIKLQE
Sbjct: 62  RHSQVRGISIKLQE 75



 Score = 85.0 bits (201), Expect = 1e-18
 Identities = 43/63 (68%), Positives = 51/63 (80%)
 Frame = +3

Query: 216 LSFKKEERERRDNYVPEVSALEQDIIEVDSDTKDMLKMLDFSNINGLQLTQPATQGGYGG 395
           +  ++EERERRDNYVP+VSALEQDIIEVD +TK+MLK LDF+NI  +QLT P T  GY  
Sbjct: 71  IKLQEEERERRDNYVPDVSALEQDIIEVDPETKEMLKHLDFNNI-VVQLTNP-TAPGYSN 128

Query: 396 RRN 404
           RRN
Sbjct: 129 RRN 131


>AB097148-2|BAC82628.1| 1077|Anopheles gambiae pol-like protein
           protein.
          Length = 1077

 Score = 23.8 bits (49), Expect = 2.7
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = +3

Query: 183 VSYTPRCEESLLSFKKEERERRDNYVPEVSALEQDIIEVDSD 308
           ++ T  C E++ +F+ EER RR   + +++ +E      D D
Sbjct: 356 INETRVCGENISTFQLEERRRRRTVIEKLN-IEDGTSLTDKD 396


>AF444783-1|AAL37904.1| 1356|Anopheles gambiae Trex protein.
          Length = 1356

 Score = 23.0 bits (47), Expect = 4.8
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = -3

Query: 359 LQTINVTEVKHLQHILGVRIDFNDILF*RR 270
           +  I+    +H+ H+ G+R+  N+I   RR
Sbjct: 464 ISNIDNASFRHMAHLYGLRLTENNIEIIRR 493


>EF588468-1|ABQ96704.1|  176|Anopheles gambiae transposase protein.
          Length = 176

 Score = 22.2 bits (45), Expect = 8.3
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = -1

Query: 49  NLRRFFYGLSPN 14
           N ++FFY L+PN
Sbjct: 129 NFKKFFYTLNPN 140


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 410,358
Number of Sequences: 2352
Number of extensions: 7510
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 563,979
effective HSP length: 59
effective length of database: 425,211
effective search space used: 36568146
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)