Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_B04
         (439 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000263-14|AAG00017.2|  130|Caenorhabditis elegans Ribosomal pr...    93   8e-20
U39654-3|AAA80406.1|  490|Caenorhabditis elegans Hypothetical pr...    29   2.0  
U39654-2|AAM51505.1|  510|Caenorhabditis elegans Hypothetical pr...    29   2.0  
U53340-3|AAA96208.1|  578|Caenorhabditis elegans Hypothetical pr...    28   2.6  
Z47745-2|CAA87664.1|  407|Caenorhabditis elegans Hypothetical pr...    27   6.0  

>AF000263-14|AAG00017.2|  130|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 17 protein.
          Length = 130

 Score = 93.1 bits (221), Expect = 8e-20
 Identities = 44/73 (60%), Positives = 51/73 (69%)
 Frame = +2

Query: 11  RVRTXXXXXXXXXXXXXYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFTTHLMRRLI 190
           RVRT             YYTR+T DF  NKR+C+E+AII +KPLRNKIAG+ THLMRR+ 
Sbjct: 3   RVRTKTVKKASRVLIEKYYTRMTNDFHNNKRVCDEVAIIGSKPLRNKIAGYITHLMRRIE 62

Query: 191 HSQVRGISIKLQE 229
              VRGISIKLQE
Sbjct: 63  RGPVRGISIKLQE 75



 Score = 48.0 bits (109), Expect = 3e-06
 Identities = 22/45 (48%), Positives = 32/45 (71%), Gaps = 3/45 (6%)
 Frame = +3

Query: 216 LSFKKEERERRDNYVPEVSALEQD---IIEVDSDTKDMLKMLDFS 341
           +  ++EERERRDNY+PE+S ++      I+VD+DT DMLK   F+
Sbjct: 71  IKLQEEERERRDNYMPEISTVDPSQLTSIKVDTDTSDMLKAAGFN 115


>U39654-3|AAA80406.1|  490|Caenorhabditis elegans Hypothetical
           protein C56G3.1a protein.
          Length = 490

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -1

Query: 154 NFVAKRLSRNDSNFLTYPFIGI 89
           N+  + +S N SN+LTYPF G+
Sbjct: 8   NYCDRGISPNASNYLTYPFDGL 29


>U39654-2|AAM51505.1|  510|Caenorhabditis elegans Hypothetical
           protein C56G3.1b protein.
          Length = 510

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -1

Query: 154 NFVAKRLSRNDSNFLTYPFIGI 89
           N+  + +S N SN+LTYPF G+
Sbjct: 28  NYCDRGISPNASNYLTYPFDGL 49


>U53340-3|AAA96208.1|  578|Caenorhabditis elegans Hypothetical
           protein F02E8.5 protein.
          Length = 578

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = +3

Query: 231 EERERRDNYVPEVSALEQDIIEVDSDTKDMLKMLDFSNING 353
           EE+ R       +++  QDI + D+  ++ML+ +  +N NG
Sbjct: 232 EEKRRNSRIQDMITSAVQDITDKDTKLEEMLRAMPDTNSNG 272


>Z47745-2|CAA87664.1|  407|Caenorhabditis elegans Hypothetical
           protein T19H5.3 protein.
          Length = 407

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +3

Query: 186 SYTPRCEESLLSFKKEERERRDNYVPEVSALEQD 287
           S T +C   L   K++ +ER+ NYV  V  L  +
Sbjct: 194 SNTKKCSRFLCELKQKLKERKKNYVLSVQILPDE 227


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,117,890
Number of Sequences: 27780
Number of extensions: 169884
Number of successful extensions: 473
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 459
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 472
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 745968860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)