Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_B04
         (439 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    22   3.4  
L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          21   5.9  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    21   7.9  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    21   7.9  

>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 21.8 bits (44), Expect = 3.4
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +3

Query: 342 NINGLQLTQPATQGGYGGRRN*TNV 416
           N+    LT+P T   YG R N T V
Sbjct: 196 NVLATSLTEPYTLRNYGRRINCTYV 220


>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 21.0 bits (42), Expect = 5.9
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -1

Query: 94  GIEVKSKPSVVFFDYNLRRFFYGLSPNTTL 5
           GI  K     V++DY    +F  LSPN T+
Sbjct: 60  GIHRKKVLLSVWWDYKGIVYFELLSPNRTI 89


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 6/19 (31%), Positives = 14/19 (73%)
 Frame = +3

Query: 198 RCEESLLSFKKEERERRDN 254
           RC +  ++++++E+E  DN
Sbjct: 20  RCTQGKVNYREKEKEVLDN 38


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 6/19 (31%), Positives = 14/19 (73%)
 Frame = +3

Query: 198 RCEESLLSFKKEERERRDN 254
           RC +  ++++++E+E  DN
Sbjct: 20  RCTQGKVNYREKEKEVLDN 38


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,342
Number of Sequences: 438
Number of extensions: 2156
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11327868
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)