Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_B04
(439 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g04800.2 68418.m00499 40S ribosomal protein S17 (RPS17D) 40S ... 95 2e-20
At5g04800.1 68418.m00498 40S ribosomal protein S17 (RPS17D) 40S ... 95 2e-20
At3g10610.1 68416.m01276 40S ribosomal protein S17 (RPS17C) simi... 95 2e-20
At2g05220.1 68415.m00550 40S ribosomal protein S17 (RPS17B) 95 2e-20
At2g04390.1 68415.m00442 40S ribosomal protein S17 (RPS17A) 95 2e-20
At3g02810.1 68416.m00273 protein kinase family protein contains ... 30 0.59
At5g40530.2 68418.m04918 expressed protein contains Pfam profile... 29 1.4
At5g40530.1 68418.m04919 expressed protein contains Pfam profile... 29 1.4
At4g24450.1 68417.m03505 starch excess protein-related similar t... 28 2.4
At1g13630.1 68414.m01601 pentatricopeptide (PPR) repeat-containi... 27 5.5
At2g33435.1 68415.m04098 RNA recognition motif (RRM)-containing ... 27 7.3
At1g74830.1 68414.m08670 expressed protein contains Pfam profile... 26 9.7
>At5g04800.2 68418.m00499 40S ribosomal protein S17 (RPS17D) 40S
ribosomal protein S17, Lycopersicon esculentum,
EMBL:AF161704
Length = 141
Score = 94.7 bits (225), Expect = 2e-20
Identities = 45/74 (60%), Positives = 54/74 (72%)
Frame = +2
Query: 8 GRVRTXXXXXXXXXXXXXYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFTTHLMRRL 187
GRVRT YY+R+TLDF TNK+I EE+AIIP+K LRNKIAGF+THLM+R+
Sbjct: 2 GRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRI 61
Query: 188 IHSQVRGISIKLQE 229
VRGIS+KLQE
Sbjct: 62 QKGPVRGISLKLQE 75
Score = 49.2 bits (112), Expect = 1e-06
Identities = 26/66 (39%), Positives = 40/66 (60%), Gaps = 4/66 (6%)
Frame = +3
Query: 216 LSFKKEERERRDNYVPEVSALEQDIIEVDSDTKDMLKMLDFSNINGLQLTQP----ATQG 383
L ++EERERR ++VP+ SA++ D I+VD +T +ML L S+ G+ +P A
Sbjct: 71 LKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTPGISAVEPQQAMAPIA 130
Query: 384 GYGGRR 401
+GG R
Sbjct: 131 AFGGGR 136
>At5g04800.1 68418.m00498 40S ribosomal protein S17 (RPS17D) 40S
ribosomal protein S17, Lycopersicon esculentum,
EMBL:AF161704
Length = 141
Score = 94.7 bits (225), Expect = 2e-20
Identities = 45/74 (60%), Positives = 54/74 (72%)
Frame = +2
Query: 8 GRVRTXXXXXXXXXXXXXYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFTTHLMRRL 187
GRVRT YY+R+TLDF TNK+I EE+AIIP+K LRNKIAGF+THLM+R+
Sbjct: 2 GRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRI 61
Query: 188 IHSQVRGISIKLQE 229
VRGIS+KLQE
Sbjct: 62 QKGPVRGISLKLQE 75
Score = 49.2 bits (112), Expect = 1e-06
Identities = 26/66 (39%), Positives = 40/66 (60%), Gaps = 4/66 (6%)
Frame = +3
Query: 216 LSFKKEERERRDNYVPEVSALEQDIIEVDSDTKDMLKMLDFSNINGLQLTQP----ATQG 383
L ++EERERR ++VP+ SA++ D I+VD +T +ML L S+ G+ +P A
Sbjct: 71 LKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTPGISAVEPQQAMAPIA 130
Query: 384 GYGGRR 401
+GG R
Sbjct: 131 AFGGGR 136
>At3g10610.1 68416.m01276 40S ribosomal protein S17 (RPS17C) similar
to 40S ribosomal protein S17 GB:AAD50774 [Lycopersicon
esculentum]
Length = 140
Score = 94.7 bits (225), Expect = 2e-20
Identities = 45/74 (60%), Positives = 54/74 (72%)
Frame = +2
Query: 8 GRVRTXXXXXXXXXXXXXYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFTTHLMRRL 187
GRVRT YY+R+TLDF TNK+I EE+AIIP+K LRNKIAGF+THLM+R+
Sbjct: 2 GRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRI 61
Query: 188 IHSQVRGISIKLQE 229
VRGIS+KLQE
Sbjct: 62 QKGPVRGISLKLQE 75
Score = 46.8 bits (106), Expect = 6e-06
Identities = 26/63 (41%), Positives = 39/63 (61%), Gaps = 2/63 (3%)
Frame = +3
Query: 216 LSFKKEERERRDNYVPEVSALEQDIIEVDSDTKDMLKMLDFSNINGLQL--TQPATQGGY 389
L ++EERERR ++VP+ SA++ D ++VD +T +ML L S+I G+ TQ A
Sbjct: 71 LKLQEEERERRMDFVPDESAIKIDDVKVDKETLEMLASLGMSDIAGISQVETQQAMAPAV 130
Query: 390 GGR 398
GR
Sbjct: 131 FGR 133
>At2g05220.1 68415.m00550 40S ribosomal protein S17 (RPS17B)
Length = 140
Score = 94.7 bits (225), Expect = 2e-20
Identities = 45/74 (60%), Positives = 54/74 (72%)
Frame = +2
Query: 8 GRVRTXXXXXXXXXXXXXYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFTTHLMRRL 187
GRVRT YY+R+TLDF TNK+I EE+AIIP+K LRNKIAGF+THLM+R+
Sbjct: 2 GRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRI 61
Query: 188 IHSQVRGISIKLQE 229
VRGIS+KLQE
Sbjct: 62 QKGPVRGISLKLQE 75
Score = 51.2 bits (117), Expect = 3e-07
Identities = 26/65 (40%), Positives = 41/65 (63%), Gaps = 4/65 (6%)
Frame = +3
Query: 216 LSFKKEERERRDNYVPEVSALEQDIIEVDSDTKDMLKMLDFSNINGLQLTQP----ATQG 383
L ++EERERR ++VP+ SA++ D I+VD +T +ML L S+ +G+ +P A
Sbjct: 71 LKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTSGISAVEPQQAMAPIA 130
Query: 384 GYGGR 398
+GGR
Sbjct: 131 AFGGR 135
>At2g04390.1 68415.m00442 40S ribosomal protein S17 (RPS17A)
Length = 141
Score = 94.7 bits (225), Expect = 2e-20
Identities = 45/74 (60%), Positives = 54/74 (72%)
Frame = +2
Query: 8 GRVRTXXXXXXXXXXXXXYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFTTHLMRRL 187
GRVRT YY+R+TLDF TNK+I EE+AIIP+K LRNKIAGF+THLM+R+
Sbjct: 2 GRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRI 61
Query: 188 IHSQVRGISIKLQE 229
VRGIS+KLQE
Sbjct: 62 QKGPVRGISLKLQE 75
Score = 47.6 bits (108), Expect = 4e-06
Identities = 22/52 (42%), Positives = 34/52 (65%)
Frame = +3
Query: 216 LSFKKEERERRDNYVPEVSALEQDIIEVDSDTKDMLKMLDFSNINGLQLTQP 371
L ++EERERR ++VP+ SA++ D I+VD +T +ML L S+ G+ P
Sbjct: 71 LKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTLGISAVDP 122
>At3g02810.1 68416.m00273 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 558
Score = 30.3 bits (65), Expect = 0.59
Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 6/83 (7%)
Frame = +3
Query: 84 TSIPIKGYVRKLLSFLLSLFATKLLGSPP---I**DVSYTPRCEESLLSFKKE---ERER 245
T++PI + K +S LS + L+ PP D S T EES L +KE + E
Sbjct: 353 TTVPILSFKDKSMSIALSRHDSNLVSPPPELATEDDKSSTSSGEESSLESEKESVSKNEY 412
Query: 246 RDNYVPEVSALEQDIIEVDSDTK 314
+ + E S++E D E DS+++
Sbjct: 413 KKKHEEEDSSMESD-DESDSNSE 434
>At5g40530.2 68418.m04918 expressed protein contains Pfam profile
PF05148: Protein of unknown function (DUF691)
Length = 301
Score = 29.1 bits (62), Expect = 1.4
Identities = 19/85 (22%), Positives = 34/85 (40%)
Frame = -1
Query: 370 GCVSCRPLMLLKSSIFNISLVSESTSMISCSSADXXXXXXXXXXXXSFLKLNRDSSHLGV 191
GC R +K+ +F+ LVS++ S+I+C ++ L L + +
Sbjct: 142 GCGDARIAKSVKNKVFSFDLVSKNPSVIACDMSNTSLESSSVDVAVFCLSLMGTNYSSYI 201
Query: 190 YETSHQMGGEPSNFVAKRLSRNDSN 116
E + +A+ SR D N
Sbjct: 202 KEAHRVLRPSGMLLIAEVKSRFDPN 226
>At5g40530.1 68418.m04919 expressed protein contains Pfam profile
PF05148: Protein of unknown function (DUF691)
Length = 287
Score = 29.1 bits (62), Expect = 1.4
Identities = 19/85 (22%), Positives = 34/85 (40%)
Frame = -1
Query: 370 GCVSCRPLMLLKSSIFNISLVSESTSMISCSSADXXXXXXXXXXXXSFLKLNRDSSHLGV 191
GC R +K+ +F+ LVS++ S+I+C ++ L L + +
Sbjct: 142 GCGDARIAKSVKNKVFSFDLVSKNPSVIACDMSNTSLESSSVDVAVFCLSLMGTNYSSYI 201
Query: 190 YETSHQMGGEPSNFVAKRLSRNDSN 116
E + +A+ SR D N
Sbjct: 202 KEAHRVLRPSGMLLIAEVKSRFDPN 226
>At4g24450.1 68417.m03505 starch excess protein-related similar to
SEX1 [Arabidopsis thaliana] GI:12044358
Length = 1284
Score = 28.3 bits (60), Expect = 2.4
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = -1
Query: 166 GEPSNFVAKRLSRNDSNFLTYPFIGIEVKSKPSVVF 59
G +F+ K+ + ++YP I + SKPS++F
Sbjct: 1162 GRAMSFITKKTNLKSPTVISYPSKRIGLYSKPSIIF 1197
>At1g13630.1 68414.m01601 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile: PF01535 PPR repeat
Length = 764
Score = 27.1 bits (57), Expect = 5.5
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +3
Query: 54 SKNTTLGLLLTSIPIKGYVRKLLSFLLSL 140
+ + T +L+ S+ + GY+RK SF+ SL
Sbjct: 633 ASSATYNILIDSLCVYGYIRKADSFIYSL 661
>At2g33435.1 68415.m04098 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 979
Score = 26.6 bits (56), Expect = 7.3
Identities = 13/42 (30%), Positives = 24/42 (57%)
Frame = +3
Query: 183 VSYTPRCEESLLSFKKEERERRDNYVPEVSALEQDIIEVDSD 308
V + R +E +S +EE+ R++++V L DI++ SD
Sbjct: 271 VKDSSRKKEDYISSFREEKSRKEDHVGAAMLLGHDIVDKFSD 312
>At1g74830.1 68414.m08670 expressed protein contains Pfam profile
PF04576: Protein of unknown function, DUF593
Length = 542
Score = 26.2 bits (55), Expect = 9.7
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +3
Query: 201 CEESLLSFKKEERERRDNYVPEVSALEQDIIEVDSDTKDM 320
CE LLSF E+ D Y + L +D+ + D +D+
Sbjct: 126 CEGCLLSFATEKDSDCDTYKSLIGILHKDLELLIDDERDL 165
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,553,509
Number of Sequences: 28952
Number of extensions: 159109
Number of successful extensions: 472
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 460
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 472
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 692941200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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