Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_B03
(534 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0 |Schizosacch... 210 1e-55
SPBC11G11.03 |||60S acidic ribosomal protein |Schizosaccharomyce... 36 0.003
SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p... 28 1.0
SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyce... 27 2.3
SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomy... 25 7.1
SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces ... 25 7.1
SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyce... 25 7.1
SPBP4H10.06c |cut14|smc2, smc2|condensin subunit Cut14|Schizosac... 25 9.4
SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces ... 25 9.4
>SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 312
Score = 210 bits (513), Expect = 1e-55
Identities = 98/174 (56%), Positives = 128/174 (73%)
Frame = +2
Query: 11 MMRKAIKDHLETNPALEKLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQAPARPGAIAPL 190
M+R+A++ + P LE+LLP ++GNVGFVFT DL +VR+ ++ N + APARP AIAPL
Sbjct: 58 MIRRAMRGIINDMPELERLLPVVRGNVGFVFTNADLKEVRETIIANVIAAPARPNAIAPL 117
Query: 191 SVVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNMLN 370
V +PA NTG+ P KTSFFQAL IPTKI++GTIEI +DVH++ KVG SEATLLNMLN
Sbjct: 118 DVFVPAGNTGMEPGKTSFFQALGIPTKITRGTIEITSDVHLVSKDAKVGPSEATLLNMLN 177
Query: 371 ISPFSYGLVVKQVYDSGTIFAPAILDIKPEDLREKFLAGVANVAALSLSIGYPT 532
ISPF+YG+ V +YD G +F+P ILD+ EDL L+ + + A+SL YPT
Sbjct: 178 ISPFTYGMDVLTIYDQGNVFSPEILDVSEEDLIGHLLSAASIITAISLGANYPT 231
>SPBC11G11.03 |||60S acidic ribosomal protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 241
Score = 36.3 bits (80), Expect = 0.003
Identities = 39/139 (28%), Positives = 61/139 (43%), Gaps = 16/139 (11%)
Frame = +2
Query: 29 KDHLETNPALEKLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQAP-ARPGAIAPLSVVIP 205
++H E L KLL G VG +FT +V E+ VQ AR GA+AP + VIP
Sbjct: 83 EEHAENVSKLTKLL---HGAVGLLFTNSKPDEVIG-YFESFVQNDFARAGAVAPFTHVIP 138
Query: 206 A----HNTGLGPEKTSFF---------QALSIPTKISKGTIEIINDVHILKPGDKVGASE 346
A G P + + L +PT + G + ++ D + G ++ + +
Sbjct: 139 AGPVYSRAGQIPVEDDILLTHTLEPQVRQLGMPTVLKNGVVTLLADFPLCTEGQQLDSRQ 198
Query: 347 ATLLNMLNI--SPFSYGLV 397
LL + I + F GL+
Sbjct: 199 TRLLKLFGITAAEFKVGLL 217
>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 728
Score = 27.9 bits (59), Expect = 1.0
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = -1
Query: 297 IISIVPFEILVGMERAWKKEVFSGPRPVL*AGMTTDNGAMAP 172
IIS P + L+G+ AW E S R + T+ +AP
Sbjct: 289 IISFTPAKYLIGIGAAWFSEKLSRERKSISVDKTSKRAILAP 330
>SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 506
Score = 26.6 bits (56), Expect = 2.3
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -1
Query: 408 TCLTTRPYEKGEMFNMLRRVASEAP 334
+ LT PYEKGE N +R S P
Sbjct: 279 SALTRLPYEKGEFINFVRYHPSITP 303
>SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 421
Score = 25.0 bits (52), Expect = 7.1
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = -1
Query: 231 SGPRPVL*AGMTTDNGAMAPGRAGAWTLFSNSLSRTSTRSPRV 103
+G PV + + G++ P AGAW L N L T ++
Sbjct: 138 NGGVPVYVPIIPPEEGSVKPVSAGAWKLDMNKLRNAITEKTKM 180
>SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 580
Score = 25.0 bits (52), Expect = 7.1
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = -3
Query: 64 FFESWICFKMVLDGFPHHGLV 2
FF+S++CF +V+ F H L+
Sbjct: 515 FFQSYLCFPVVVIVFIAHALI 535
>SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 496
Score = 25.0 bits (52), Expect = 7.1
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -3
Query: 412 VHLFDNKTIRKGRDVQHVEK 353
V L D +RKG DVQ +EK
Sbjct: 289 VLLSDTAGLRKGEDVQEIEK 308
>SPBP4H10.06c |cut14|smc2, smc2|condensin subunit
Cut14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1172
Score = 24.6 bits (51), Expect = 9.4
Identities = 15/56 (26%), Positives = 26/56 (46%)
Frame = -3
Query: 244 ERSLLRTKASVMSGNDDRQWSNGSRTSRGLDFVLQQFITHINKISTGEDKANISLD 77
++ +L K + D+R + R LD LQ +I +IST + N +L+
Sbjct: 271 KQEVLILKEKIKKIEDERMRQMSVSSDRTLDSQLQTVNENITRISTSIELKNTALE 326
>SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 886
Score = 24.6 bits (51), Expect = 9.4
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = -3
Query: 412 VHLFDNKTIRKGRDVQHVEKSSFRSS 335
VH D T+R G + SSFR S
Sbjct: 62 VHCLDIPTVRPGSSMSRTSASSFRYS 87
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,327,593
Number of Sequences: 5004
Number of extensions: 47997
Number of successful extensions: 153
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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