Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_B03
         (534 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15432| Best HMM Match : Ribosomal_L10 (HMM E-Value=3.1e-37)        171   4e-43
SB_8680| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.4  
SB_36095| Best HMM Match : DMP1 (HMM E-Value=3.2)                      29   2.4  
SB_48268| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  
SB_8631| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.2  
SB_4107| Best HMM Match : M (HMM E-Value=8e-22)                        28   4.2  
SB_17157| Best HMM Match : Kinesin (HMM E-Value=0.59)                  27   7.3  

>SB_15432| Best HMM Match : Ribosomal_L10 (HMM E-Value=3.1e-37)
          Length = 261

 Score =  171 bits (415), Expect = 4e-43
 Identities = 78/110 (70%), Positives = 94/110 (85%)
 Frame = +2

Query: 11  MMRKAIKDHLETNPALEKLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQAPARPGAIAPL 190
           M+RKAI+ HLE NP LEKLLPHIKGN+GFVFT+ DL DVR  ++ENKV APA+ G IAP+
Sbjct: 42  MIRKAIRGHLENNPDLEKLLPHIKGNIGFVFTKEDLADVRKIIMENKVAAPAKAGVIAPI 101

Query: 191 SVVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKPGDKVGA 340
            V +PA NTGLGPEKTSFFQAL+IPTKI++GTIEIINDVH++K  +K+ A
Sbjct: 102 DVFVPAGNTGLGPEKTSFFQALAIPTKIARGTIEIINDVHLIKKDEKLKA 151


>SB_8680| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2462

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
 Frame = +2

Query: 143  ENKVQAPARPGAIAPLSVVIPAHN--TGLGPEKTSFFQALSIPTKISKGTIEIINDVHIL 316
            E ++ +PA     +P S+        TGL P   S  Q LS+ T +   ++    D+   
Sbjct: 2069 EPRIVSPAGSSLASPTSIATSVITGVTGLHPVTVSHHQPLSVITSLVSASVSSTTDMQNS 2128

Query: 317  KPGDK 331
             PG K
Sbjct: 2129 TPGKK 2133


>SB_36095| Best HMM Match : DMP1 (HMM E-Value=3.2)
          Length = 939

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 37/150 (24%), Positives = 67/150 (44%), Gaps = 6/150 (4%)
 Frame = -3

Query: 514 QRERGHVGHSSKELLAKVLRLDVEN----CRREDGTGVV-HLFDNKTIRKGR-DVQHVEK 353
           ++ +G +G   K   ++V  L+ E      R    T ++  L ++++ RK   D++ V  
Sbjct: 238 KKAKGLIGEPIKGSPSRVRNLNDEQFYRKARSHPNTPLIPDLVEHQSSRKSLGDIESVAH 297

Query: 352 SSFRSSHLITRLQDMDIIDNFNSTL*NLSGDGKSLEERSLLRTKASVMSGNDDRQWSNGS 173
              RSS +  + Q++ + D+       + G      ER   RT  S  S +  +     S
Sbjct: 298 GLRRSSFVPPKKQNL-LADDKGMVGLRVEGKLCPRNERRNSRTPNSPRSSDSLQVNDPAS 356

Query: 172 RTSRGLDFVLQQFITHINKISTGEDKANIS 83
           R  R   + LQQ ++ +NK +T   K N+S
Sbjct: 357 RAKRPSIYDLQQILSELNKEATA--KGNLS 384


>SB_48268| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4527

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
 Frame = +2

Query: 230  EKTSFFQALSIP---TKISKGTIEIINDVHILKPGDKVGASEATLLNMLNISPFSY-GLV 397
            E  S  Q+ + P   T++S G+   +  V  +KP  + G  + T ++  N+S  S     
Sbjct: 2269 EPVSIMQSQNTPPVETELSAGSRTSLPKVSAIKPSVEYGQLDDTEIHETNLSASSIPSEK 2328

Query: 398  VKQVYDSGTIFAPAILDI 451
            VK ++ S T+  P+ L I
Sbjct: 2329 VKSLFMSSTLDTPSSLSI 2346


>SB_8631| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 294

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
 Frame = -3

Query: 520 DGQRERG-----HVGHSSKELLAKVLRLDVENCRREDGTGVVHLFDNKTIRKGRDVQHVE 356
           DGQ+++G         S  E   +   L+VE  +RE    +   FD   + + R ++HVE
Sbjct: 66  DGQQDQGVNDEQRFESSGDEGTNEFQALNVEELQREILDDIKRAFDEGDVEELRSLKHVE 125

Query: 355 KSSFR 341
           +S  R
Sbjct: 126 RSKLR 130


>SB_4107| Best HMM Match : M (HMM E-Value=8e-22)
          Length = 2039

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
 Frame = -3

Query: 532  RRVPDGQRERGHVGHSSKELLAKVLRLDVE--NCRRE 428
            R++ D +RE+  V H++ EL  KV + + E  N RR+
Sbjct: 1120 RQLKDEEREKDAVSHTANELRGKVKKSEAEKTNLRRQ 1156


>SB_17157| Best HMM Match : Kinesin (HMM E-Value=0.59)
          Length = 2053

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -1

Query: 336  PTLSPGFRIWTSLIISIVPFEILVGMERAWKKEVFSGPR 220
            P   P FR   +L+ ++  ++    M RAW+KEV S  R
Sbjct: 1843 PRNVPNFRACCALVSALSGYQY---MRRAWRKEVISSQR 1878


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,993,329
Number of Sequences: 59808
Number of extensions: 389069
Number of successful extensions: 1205
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1085
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1204
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1203486867
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)