Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_B03
(534 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g40010.1 68415.m04916 60S acidic ribosomal protein P0 (RPP0A) 203 7e-53
At3g11250.1 68416.m01368 60S acidic ribosomal protein P0 (RPP0C)... 202 2e-52
At3g09200.1 68416.m01094 60S acidic ribosomal protein P0 (RPP0B)... 202 2e-52
At1g25260.1 68414.m03134 acidic ribosomal protein P0-related con... 35 0.039
At1g64255.1 68414.m07280 SWIM zinc finger family protein contain... 33 0.12
At3g50610.1 68416.m05534 hypothetical protein 31 0.37
At5g12430.1 68418.m01461 DNAJ heat shock N-terminal domain-conta... 29 2.6
At4g22580.1 68417.m03258 exostosin family protein contains Pfam ... 28 4.5
At3g48290.1 68416.m05270 cytochrome P450, putative very strong s... 28 4.5
At3g21340.1 68416.m02695 leucine-rich repeat protein kinase, put... 28 4.5
At5g42950.1 68418.m05236 GYF domain-containing protein contains ... 27 5.9
At1g56160.1 68414.m06452 myb family transcription factor (MYB72)... 27 5.9
At5g61950.1 68418.m07776 ubiquitin carboxyl-terminal hydrolase-r... 27 7.9
At4g29380.1 68417.m04197 protein kinase family protein / WD-40 r... 27 7.9
At1g51860.1 68414.m05846 leucine-rich repeat protein kinase, put... 27 7.9
>At2g40010.1 68415.m04916 60S acidic ribosomal protein P0 (RPP0A)
Length = 317
Score = 203 bits (495), Expect = 7e-53
Identities = 96/176 (54%), Positives = 132/176 (75%), Gaps = 2/176 (1%)
Frame = +2
Query: 11 MMRKAIKDHLET--NPALEKLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQAPARPGAIA 184
MM+++++ H + N A LLP ++GNVG +FT+GDL +V +++ + KV APAR G +A
Sbjct: 61 MMKRSVRIHADKTGNQAFLSLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVA 120
Query: 185 PLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNM 364
P+ VV+ NTGL P +TSFFQ L+IPTKI+KGT+EII V ++K GDKVG+SEA LL
Sbjct: 121 PIDVVVQPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSEAALLAK 180
Query: 365 LNISPFSYGLVVKQVYDSGTIFAPAILDIKPEDLREKFLAGVANVAALSLSIGYPT 532
L I PFSYGLVV+ VYD+G++F P +L++ +DL EKF AGV+ + ALSL+I YPT
Sbjct: 181 LGIRPFSYGLVVESVYDNGSVFNPEVLNLTEDDLVEKFAAGVSMITALSLAISYPT 236
>At3g11250.1 68416.m01368 60S acidic ribosomal protein P0 (RPP0C)
similar to 60S acidic ribosomal protein P0 GI:2088654
[Arabidopsis thaliana]
Length = 323
Score = 202 bits (492), Expect = 2e-52
Identities = 93/176 (52%), Positives = 133/176 (75%), Gaps = 2/176 (1%)
Frame = +2
Query: 11 MMRKAIKDHLET--NPALEKLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQAPARPGAIA 184
MM+++++ H E N A+ LLP ++GNVG +FT+GDL +V +++ + KV APAR G +A
Sbjct: 60 MMKRSVRIHSENSGNTAILNLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVA 119
Query: 185 PLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNM 364
P+ VV+ NTGL P +TSFFQ L+IPTKI+KGT+EII V ++K GDKVG+SEA LL
Sbjct: 120 PIDVVVQPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKQGDKVGSSEAALLAK 179
Query: 365 LNISPFSYGLVVKQVYDSGTIFAPAILDIKPEDLREKFLAGVANVAALSLSIGYPT 532
L I PFSYGLVV+ VYD+G++F+P +LD+ + L EKF +G++ V +L+L++ YPT
Sbjct: 180 LGIRPFSYGLVVQSVYDNGSVFSPEVLDLTEDQLVEKFASGISMVTSLALAVSYPT 235
>At3g09200.1 68416.m01094 60S acidic ribosomal protein P0 (RPP0B)
similar to putative 60S acidic ribosomal protein P0
GB:P50346 [Glycine max]
Length = 320
Score = 202 bits (492), Expect = 2e-52
Identities = 93/176 (52%), Positives = 133/176 (75%), Gaps = 2/176 (1%)
Frame = +2
Query: 11 MMRKAIKDHLET--NPALEKLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQAPARPGAIA 184
MM+++++ H E N A+ LLP ++GNVG +FT+GDL +V +++ + KV APAR G +A
Sbjct: 60 MMKRSVRIHSENTGNTAILNLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVA 119
Query: 185 PLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNM 364
P+ VV+ NTGL P +TSFFQ L+IPTKI+KGT+EII V ++K GDKVG+SEA LL
Sbjct: 120 PIDVVVQPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKQGDKVGSSEAALLAK 179
Query: 365 LNISPFSYGLVVKQVYDSGTIFAPAILDIKPEDLREKFLAGVANVAALSLSIGYPT 532
L I PFSYGLVV+ VYD+G++F+P +LD+ + L EKF +G++ V +L+L++ YPT
Sbjct: 180 LGIRPFSYGLVVQSVYDNGSVFSPEVLDLTEDQLVEKFASGISMVTSLALAVSYPT 235
>At1g25260.1 68414.m03134 acidic ribosomal protein P0-related
contains similarity to 60S acidic ribosomal protein
GI:5815233 from [Homo sapiens]
Length = 235
Score = 34.7 bits (76), Expect = 0.039
Identities = 28/147 (19%), Positives = 64/147 (43%), Gaps = 3/147 (2%)
Frame = +2
Query: 41 ETNPALEKLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQAPARPGAIAPLSVVIPAHNTG 220
E + K+ ++G+ G + T +V + +R G+IA +V +
Sbjct: 85 ELRSGIYKVSKLLRGDTGLLVTDMPKEEVESLFNAYEDSDFSRTGSIAVETVELKEGPLE 144
Query: 221 -LGPEKTSFFQALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNML--NISPFSYG 391
E + L +P +++KGT+E++ D + + G ++ A +L +L ++ F
Sbjct: 145 QFTHEMEPLLRKLEMPVRLNKGTVELVADFVVCEEGKQLSPKSAHILRLLRMKMATFKLN 204
Query: 392 LVVKQVYDSGTIFAPAILDIKPEDLRE 472
L+ + ++ + ++ EDL +
Sbjct: 205 LLCRWSPSDFELYREDLSELYREDLSD 231
>At1g64255.1 68414.m07280 SWIM zinc finger family protein contains
Pfam profile PF04434: SWIM zinc finger
Length = 750
Score = 33.1 bits (72), Expect = 0.12
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = -3
Query: 496 VGHSSKELLAKV-LRLDVENCRREDGTGVVHLFDNKTIRKGRDVQHVEKSSFRS 338
+G SSK + ++L+ E R + GVVHL D+ T+ K HV K S
Sbjct: 131 LGGSSKRQKTDIHVKLERETDRNSESDGVVHLVDSSTLNKDSISGHVSKPCMSS 184
>At3g50610.1 68416.m05534 hypothetical protein
Length = 229
Score = 31.5 bits (68), Expect = 0.37
Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Frame = +2
Query: 32 DHLETNPALEKLLPHIKGNVGFVFTRGDLVDVRD-KLLENKVQAPARPGAIAPLSVVIPA 208
D + T+P + H KGNV + D KLL+ VQ + G+ + P
Sbjct: 31 DFVPTSPGNSPGVGHKKGNVNVEGFQDDFKPTEGRKLLKTNVQDHFKTGSTDDFAPTSPG 90
Query: 209 HNTGLGPEK 235
H+ G+G +K
Sbjct: 91 HSPGVGHKK 99
>At5g12430.1 68418.m01461 DNAJ heat shock N-terminal
domain-containing protein similarity to
TETRATRICOPEPTIDE REPEAT PROTEIN 2 , human,
SWISSPROT:TTC2_HUMAN; contains Pfam profiles PF00226:
DnaJ domain, PF00515: TPR Domain
Length = 1165
Score = 28.7 bits (61), Expect = 2.6
Identities = 16/60 (26%), Positives = 29/60 (48%)
Frame = -1
Query: 435 GAKMVPESYTCLTTRPYEKGEMFNMLRRVASEAPTLSPGFRIWTSLIISIVPFEILVGME 256
G+ PE+Y+ + PYE+ E + R +++ P +P + L+ + EI G E
Sbjct: 372 GSNEAPEAYSPMDISPYEETE---VCREFSADIPPTAPNYLFDAELVAATERMEINEGDE 428
>At4g22580.1 68417.m03258 exostosin family protein contains Pfam
profile: PF03016 Exostosin family
Length = 435
Score = 27.9 bits (59), Expect = 4.5
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = +1
Query: 214 HWPWS*EDFFLPGSFHPH 267
+WPW + P SFHPH
Sbjct: 213 YWPWQEQAVPYPTSFHPH 230
>At3g48290.1 68416.m05270 cytochrome P450, putative very strong
similarity to Cytochrome P450 71A24
(SP:Q9STK9)[Arabidopsis thaliana];
Length = 488
Score = 27.9 bits (59), Expect = 4.5
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -3
Query: 445 ENCRREDGTGVVHLFDNKTIRKGRDVQHVEKS 350
E R+ V+HLF NK +R RDV+ E S
Sbjct: 123 EYWRQMKSVCVLHLFSNKMVRSFRDVRQEEIS 154
>At3g21340.1 68416.m02695 leucine-rich repeat protein kinase,
putative similar to light repressible receptor protein
kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
contains leucine rich repeat (LRR) domains,
Pfam:PF00560; contains protein kinase domain,
Pfam:PF00069
Length = 880
Score = 27.9 bits (59), Expect = 4.5
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +2
Query: 11 MMRKAIKDHLETNPALEKLLPHIKGNVGFVFTRGDLVDVRDKLL 142
++ + I + L N + EK PHI VG + T+GD+ ++ D L
Sbjct: 764 VLLEIITNQLVINQSREK--PHIAEWVGLMLTKGDIQNIMDPKL 805
>At5g42950.1 68418.m05236 GYF domain-containing protein contains Pfam
profile: PF02213 GYF domain
Length = 1714
Score = 27.5 bits (58), Expect = 5.9
Identities = 15/67 (22%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Frame = -1
Query: 513 NESAATLATPARNFSRRSSGLMS-RIAGAKMVPESYTCLTTRPYEKGEMFNMLRRVASEA 337
N++ A+ TP+ + + G + R+ + +++ + YE+ + + + SE
Sbjct: 966 NQTVASFETPSLHLQNQLFGNVDPRMVLPDQIDDTHKKESKSEYERTVSADYVNSLYSEK 1025
Query: 336 PTLSPGF 316
P LSPG+
Sbjct: 1026 PVLSPGY 1032
>At1g56160.1 68414.m06452 myb family transcription factor (MYB72)
contains Pfam profile: PF00249 myb-like DNA-binding
domain; identical to cDNA putative transcription factor
(MYB72) mRNA, partial cds GI:3941501
Length = 296
Score = 27.5 bits (58), Expect = 5.9
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +1
Query: 7 GHDEESHQGPS*NKSSSRKTASSHQGKC 90
G EE H G N+S + T+S HQG+C
Sbjct: 145 GAQEEIHSGL--NESQNSATSSHHQGEC 170
>At5g61950.1 68418.m07776 ubiquitin carboxyl-terminal
hydrolase-related contains Pfam profiles PF00443:
Ubiquitin carboxyl-terminal hydrolase, PF04780: Protein
of unknown function (DUF629), PF04781: Protein of
unknown function (DUF627)
Length = 1132
Score = 27.1 bits (57), Expect = 7.9
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +3
Query: 69 FLTSRE-MLALSSPVEILLMCVINCWRTKSKP 161
FLTS+E L++SS +++ V+N WR P
Sbjct: 897 FLTSQEEFLSMSSDAAKVVVAVLNLWRCWKNP 928
>At4g29380.1 68417.m04197 protein kinase family protein / WD-40 repeat
family protein contains Pfam PF00400: WD domain, G-beta
repeat; contains Pfam PF00069: Protein kinase domain;
contains PF02985: HEAT repeat; similar to adaptor protein
(GI:1817584) [Homo sapiens]; similar to VPS15 protein
(GI:6103009) [Pichia pastoris]
Length = 1494
Score = 27.1 bits (57), Expect = 7.9
Identities = 25/63 (39%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Frame = +2
Query: 332 VGASEATLLNMLNISPFSYGLV-VKQVYDSGTIFAPAILDIKPEDLREKFLAGVANVAAL 508
VGAS+ +++M +I S GL V + Y SG I+DIK +D++E L + N A
Sbjct: 1146 VGASDG-VIHMFSIDHISRGLGNVVEKY-SG------IVDIKKKDVKEGALVSLLNYTAD 1197
Query: 509 SLS 517
SLS
Sbjct: 1198 SLS 1200
>At1g51860.1 68414.m05846 leucine-rich repeat protein kinase,
putative similar to light repressible receptor protein
kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
contains leucine rich repeat (LRR) domains,
Pfam:PF00560; contains protein kinase domain,
Pfam:PF00069
Length = 890
Score = 27.1 bits (57), Expect = 7.9
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +2
Query: 71 PHIKGNVGFVFTRGDLVDVRDKLL 142
PHI VGF+ T+GD+ + D L
Sbjct: 792 PHINDWVGFMLTKGDIKSIVDPKL 815
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,578,452
Number of Sequences: 28952
Number of extensions: 269913
Number of successful extensions: 911
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 885
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 911
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 984125600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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