Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_B02
(341 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC3B8.05 |||diphthamide biosynthesis protein |Schizosaccharomy... 170 6e-44
SPBC17D1.02 |||diphthamide biosynthesis protein |Schizosaccharom... 67 8e-13
SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 27 0.60
SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit Cdc21... 27 1.1
SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ... 26 1.4
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 26 1.4
SPAC4H3.11c |ppc89|mug127|spindle pole body protein Ppc89|Schizo... 25 2.4
SPCC11E10.05c |ynd1||nucleoside diphosphatase |Schizosaccharomyc... 25 3.2
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p... 24 5.6
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S... 24 7.5
SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase Ubp8|Schizos... 24 7.5
SPAC2F3.18c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 24 7.5
SPBC1271.09 |||glycerophosphodiester transporter|Schizosaccharom... 23 9.8
SPCC622.12c |||NADP-specific glutamate dehydrogenase |Schizosacc... 23 9.8
SPCC1795.09 |yps1||aspartic protease Yps1|Schizosaccharomyces po... 23 9.8
SPCC1753.01c |ssb2|SPCC584.06c, rpa2|single-stranded DNA binding... 23 9.8
>SPBC3B8.05 |||diphthamide biosynthesis protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 436
Score = 170 bits (413), Expect = 6e-44
Identities = 78/112 (69%), Positives = 88/112 (78%)
Frame = +1
Query: 4 RGLNRACEGLPQNYNFEIHKTIWRIRTLKAKRVALQMPEGLTMFATTLCDIVETFTDADT 183
+ +N A + LPQNYNFEIHKTIW IR KAKRVALQ+PEGL MF L DI E F +T
Sbjct: 60 KAINEAIKLLPQNYNFEIHKTIWHIRLRKAKRVALQLPEGLLMFGCILSDIFEQFCQVET 119
Query: 184 VIMGDVTYGACCVDDFTAVALGVDLLVHYGHSCLIPIDQTNTIKVPYIFVDI 339
++MGDVTYGACC+DDFTA AL D LVHYGHSCLIP+DQT IKV Y+FVDI
Sbjct: 120 IVMGDVTYGACCIDDFTARALDCDFLVHYGHSCLIPVDQT-PIKVLYVFVDI 170
>SPBC17D1.02 |||diphthamide biosynthesis protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 503
Score = 66.9 bits (156), Expect = 8e-13
Identities = 32/94 (34%), Positives = 53/94 (56%)
Frame = +1
Query: 49 FEIHKTIWRIRTLKAKRVALQMPEGLTMFATTLCDIVETFTDADTVIMGDVTYGACCVDD 228
+EI++T+ I++ VALQ P+ + + I+ +A+ I+ D YG+CCVD+
Sbjct: 37 YEINRTVDFIKSGNYNSVALQFPDEHLADSGKVASILTNLVEANVQILADTNYGSCCVDE 96
Query: 229 FTAVALGVDLLVHYGHSCLIPIDQTNTIKVPYIF 330
A + D +VHYG +CL P T+ + V Y+F
Sbjct: 97 VAAEHMSADAIVHYGRACLSP---TSRLPVLYVF 127
>SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 860
Score = 27.5 bits (58), Expect = 0.60
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Frame = -1
Query: 254 STPSATAVKSSTQHAPYVTSPIITVSASVNVSTISHN--VVANIVRPSGI 111
STP T V + P T IT +++ N TIS + V +I PSG+
Sbjct: 81 STPKTTPVSLNAGVPPSNTGANITTNSNNNAQTISSSSQSVGHIDNPSGL 130
>SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit
Cdc21|Schizosaccharomyces pombe|chr 3|||Manual
Length = 911
Score = 26.6 bits (56), Expect = 1.1
Identities = 12/49 (24%), Positives = 25/49 (51%)
Frame = +1
Query: 121 GLTMFATTLCDIVETFTDADTVIMGDVTYGACCVDDFTAVALGVDLLVH 267
GLT + T D + ++ +++ D G CC+D+F ++ ++H
Sbjct: 577 GLTAYITRDQDTKQLVLESGALVLSDG--GICCIDEFDKMSDATRSILH 623
>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
zf-fungal binuclear cluster type |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 977
Score = 26.2 bits (55), Expect = 1.4
Identities = 13/43 (30%), Positives = 26/43 (60%)
Frame = -1
Query: 260 SKSTPSATAVKSSTQHAPYVTSPIITVSASVNVSTISHNVVAN 132
+++ P A A S++QH + P+ S ++N+ T S ++V+N
Sbjct: 255 TRALPLAPA--SNSQHPSLSSQPVSVPSNTINIPTDSLSIVSN 295
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 26.2 bits (55), Expect = 1.4
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = -1
Query: 263 TSKSTPSATAVKSSTQHAPYVTSPIITVSASVNVSTISHNV 141
TS STP T +++ PY ++P+ + + T S +V
Sbjct: 416 TSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTSV 456
Score = 25.4 bits (53), Expect = 2.4
Identities = 10/33 (30%), Positives = 21/33 (63%)
Frame = -1
Query: 254 STPSATAVKSSTQHAPYVTSPIITVSASVNVST 156
STP AT +++ PY ++P+ + + +++ ST
Sbjct: 547 STPLATTNCTTSTSVPYTSTPVTSSNYTISSST 579
Score = 23.8 bits (49), Expect = 7.5
Identities = 10/38 (26%), Positives = 20/38 (52%)
Frame = -1
Query: 254 STPSATAVKSSTQHAPYVTSPIITVSASVNVSTISHNV 141
STP AT +++ PY ++P+ + + T S ++
Sbjct: 442 STPLATTNCTTSTSVPYTSTPVTSTPLTTTNCTTSTSI 479
Score = 23.8 bits (49), Expect = 7.5
Identities = 9/33 (27%), Positives = 20/33 (60%)
Frame = -1
Query: 254 STPSATAVKSSTQHAPYVTSPIITVSASVNVST 156
STP T +++ PY ++P+ + + +++ ST
Sbjct: 488 STPLTTTNCTTSTSVPYTSTPVTSSNYTISSST 520
>SPAC4H3.11c |ppc89|mug127|spindle pole body protein
Ppc89|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 25.4 bits (53), Expect = 2.4
Identities = 13/42 (30%), Positives = 25/42 (59%)
Frame = +2
Query: 14 IEHVKVYHKITTSKYIKLYGGYEL*KQRELLYKCLKV*QCLQ 139
+E K Y K++ +Y L GY K++E+ K +K+ +C++
Sbjct: 724 MELKKRYEKLS-DRYNSLTPGYHKHKRQEIKNKLIKLIECME 764
>SPCC11E10.05c |ynd1||nucleoside diphosphatase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 572
Score = 25.0 bits (52), Expect = 3.2
Identities = 19/71 (26%), Positives = 33/71 (46%)
Frame = +1
Query: 10 LNRACEGLPQNYNFEIHKTIWRIRTLKAKRVALQMPEGLTMFATTLCDIVETFTDADTVI 189
L+ AC + +NY+F+I IR + K EG+ + T +++T + DT
Sbjct: 115 LSHACRYIKKNYDFDIPNCSNSIRVIDGK------AEGMYGWLATNY-LLKTLEEKDTST 167
Query: 190 MGDVTYGACCV 222
+G + G V
Sbjct: 168 VGFLDMGGASV 178
>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1323
Score = 24.2 bits (50), Expect = 5.6
Identities = 9/35 (25%), Positives = 16/35 (45%)
Frame = -3
Query: 231 KVIYTACSICDISHNNRVSISKCFYYIT*CSCKHC 127
K + C+ C+ + +N KC+ + SC C
Sbjct: 1234 KTLVNHCNSCNSTTSNTRICEKCYSLVPRMSCTFC 1268
>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1944
Score = 23.8 bits (49), Expect = 7.5
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -2
Query: 124 DLQAFVKQLSLLLEFVSSI*FYVFRSCNFVV 32
++Q F+K LSLLL+ V + F NF V
Sbjct: 245 EMQIFLKGLSLLLKHVDHLYFRGLTGKNFNV 275
>SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase
Ubp8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 449
Score = 23.8 bits (49), Expect = 7.5
Identities = 8/34 (23%), Positives = 16/34 (47%)
Frame = -3
Query: 264 YKQVNTKCYSCKVIYTACSICDISHNNRVSISKC 163
Y+++ T+ +SC + CS C + + C
Sbjct: 21 YQKICTQIFSCHFVPRRCSTCKRINKRSIRCLSC 54
>SPAC2F3.18c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 110
Score = 23.8 bits (49), Expect = 7.5
Identities = 16/61 (26%), Positives = 28/61 (45%)
Frame = -3
Query: 336 IYKYIWNFDSISLVNWYKTGMAIMYKQVNTKCYSCKVIYTACSICDISHNNRVSISKCFY 157
+ Y+++ ++ +L++ G + KQV C VIY C + +I N CF
Sbjct: 37 VLSYLFSIEAETLMHDL-VGSGLTGKQVAKTCLGAVVIYAVC-LMNIFFRNS---ENCFK 91
Query: 156 Y 154
Y
Sbjct: 92 Y 92
>SPBC1271.09 |||glycerophosphodiester
transporter|Schizosaccharomyces pombe|chr 2|||Manual
Length = 543
Score = 23.4 bits (48), Expect = 9.8
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = -1
Query: 293 IGIRQEWP*CTSKSTPSATAVKSSTQHAPYV 201
IGI E+P + ++ S+ +KS +HA ++
Sbjct: 188 IGIGAEYPCGSVAASESSNELKSGLRHAAFI 218
>SPCC622.12c |||NADP-specific glutamate dehydrogenase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 451
Score = 23.4 bits (48), Expect = 9.8
Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Frame = +1
Query: 82 TLKAKRVALQMPEGLTMFATTLC----DIVETFTDADTVIMGDVTYG 210
TLK KRVA+ + +A C IV++ +D+ V++ G
Sbjct: 217 TLKGKRVAISGSGNVAQYAALKCIQEGAIVKSISDSKGVLIAKTAEG 263
>SPCC1795.09 |yps1||aspartic protease Yps1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 521
Score = 23.4 bits (48), Expect = 9.8
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = -1
Query: 245 SATAVKSSTQHAPYVTSPIITVSA--SVNVSTISHNVVAN 132
SA + S ++ Y +S + SA S N+S IS N VAN
Sbjct: 457 SAVNISESVVYS-YTSSSSMPSSAIPSFNISLISQNAVAN 495
>SPCC1753.01c |ssb2|SPCC584.06c, rpa2|single-stranded DNA binding
protein Ssb2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 279
Score = 23.4 bits (48), Expect = 9.8
Identities = 6/23 (26%), Positives = 14/23 (60%)
Frame = +2
Query: 17 EHVKVYHKITTSKYIKLYGGYEL 85
EH+ ++ T Y+++YG ++
Sbjct: 113 EHIDALSELATDTYVRVYGNIKI 135
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,471,806
Number of Sequences: 5004
Number of extensions: 28941
Number of successful extensions: 83
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 100068878
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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