Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_B02
(341 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_1210 - 34954006-34955412 106 4e-24
11_03_0017 + 8990852-8990938,8991056-8991243,8991687-8991795,899... 54 4e-08
02_04_0009 - 18865087-18866249,18866357-18866471,18866555-188666... 29 0.72
01_05_0265 + 20188160-20188211,20188291-20189019,20189103-201892... 29 0.72
06_03_1336 - 29424470-29424897,29425243-29429653 28 1.7
04_04_1435 + 33585508-33586490,33586646-33586664 28 1.7
06_01_0165 + 1288107-1290476 27 3.9
02_01_0777 - 5785295-5787370,5787723-5788769 27 3.9
02_05_1225 + 35060642-35060815,35061254-35061802,35062284-350623... 27 5.1
11_06_0145 - 20615044-20617167,20617444-20618076 26 6.7
04_01_0556 - 7156851-7157096,7157288-7157530,7158112-7158153,715... 26 6.7
12_02_0890 + 24040981-24041125,24041264-24041317,24042675-240428... 26 8.9
09_04_0695 - 19547101-19548010,19548089-19548587,19549461-195497... 26 8.9
07_03_1575 - 27848977-27849095,27849254-27849302,27850270-278502... 26 8.9
05_06_0240 - 26629218-26629323,26629412-26629490,26629656-266297... 26 8.9
02_04_0012 - 18891917-18893091,18893209-18893323,18893425-188934... 26 8.9
01_06_0360 - 28729006-28729446,28729810-28730258,28730499-28731480 26 8.9
>02_05_1210 - 34954006-34955412
Length = 468
Score = 106 bits (255), Expect = 4e-24
Identities = 52/107 (48%), Positives = 72/107 (67%), Gaps = 4/107 (3%)
Frame = +1
Query: 31 LPQNYNFEIHKTIWRIRTLKAKRVALQMPEGLTMFATTLCDIVETFTDAD----TVIMGD 198
LP YNFE+ KT RIR+ A+R ALQ+PEGL +F+ L ++ F + D +I+ D
Sbjct: 54 LPAAYNFELPKTAHRIRSSGARRTALQLPEGLLLFSLPLSHLLAPFLEPDPSNDVLILAD 113
Query: 199 VTYGACCVDDFTAVALGVDLLVHYGHSCLIPIDQTNTIKVPYIFVDI 339
TYGACC+ D A AL D+LVHYGHSCL+P+ ++ + V Y+FV+I
Sbjct: 114 PTYGACCLADRPAKALAADVLVHYGHSCLVPV-TSSLLPVLYVFVEI 159
>11_03_0017 +
8990852-8990938,8991056-8991243,8991687-8991795,
8992448-8992832,8993240-8993309,8993410-8993477,
8995009-8995124,8995211-8995317,8995488-8995627,
8995794-8996044
Length = 506
Score = 53.6 bits (123), Expect = 4e-08
Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Frame = +1
Query: 49 FEIHKTIWRIRTLKAKRVALQMPEGLTMFATTLCDIVETFTDADTV---IMGDVTYGACC 219
+E+ +T IR RVALQ P+ + A + + V +M D Y +CC
Sbjct: 9 YEVPRTAEFIRARAYTRVALQFPDEMLRDAAAVAQALRRELGGGGVKLFVMADTAYNSCC 68
Query: 220 VDDFTAVALGVDLLVHYGHSCLIP 291
VD+ A + +VHYGH+C+ P
Sbjct: 69 VDEVGASHIDAQCVVHYGHACMSP 92
>02_04_0009 -
18865087-18866249,18866357-18866471,18866555-18866607,
18866703-18866963,18867100-18867150,18867255-18867503,
18867634-18867856,18867958-18868071
Length = 742
Score = 29.5 bits (63), Expect = 0.72
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
Frame = -1
Query: 248 PSATAVKSSTQHAPYVTSPIITV---SASVNVSTISHNVVANIVRPSGICKATLFAFRVR 78
P V +S ++ V P + +ASV V T++ ANI GIC T+F+
Sbjct: 395 PRVEVVHTSNKYEGQVYIPEVNFLIGAASVAV-TLAFQTTANIGNAYGICVVTVFSITTH 453
Query: 77 ILHIVLCI 54
++ +V+ +
Sbjct: 454 LMTVVMLL 461
>01_05_0265 +
20188160-20188211,20188291-20189019,20189103-20189231,
20189857-20189938,20190034-20190166,20190269-20190340,
20190478-20190573,20190651-20190764,20190838-20191050,
20191144-20191242,20191328-20191488,20191589-20191685,
20191828-20191989,20192068-20192148,20192242-20192320,
20192414-20192550,20192638-20192688,20192776-20192844,
20193583-20193700,20194142-20194197
Length = 909
Score = 29.5 bits (63), Expect = 0.72
Identities = 13/49 (26%), Positives = 26/49 (53%)
Frame = +1
Query: 121 GLTMFATTLCDIVETFTDADTVIMGDVTYGACCVDDFTAVALGVDLLVH 267
GLT + T + ET ++ +++ D G CC+D+F ++ ++H
Sbjct: 526 GLTAYVTKDPETGETVLESGALVLSDK--GVCCIDEFDKMSDNARSMLH 572
>06_03_1336 - 29424470-29424897,29425243-29429653
Length = 1612
Score = 28.3 bits (60), Expect = 1.7
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = +1
Query: 97 RVALQMPEGLTMFATTLCDIVETFTDADTVIMGDVTYGACCVDDFTAVAL 246
R ++ M +T AT + + D +I D+T+G CCV D T + +
Sbjct: 242 RSSIAMLRPVTTSATIEPEFYGRKGEKDRIIK-DITHGDCCVKDLTVIPI 290
>04_04_1435 + 33585508-33586490,33586646-33586664
Length = 333
Score = 28.3 bits (60), Expect = 1.7
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = -1
Query: 194 PIITVSASVNVSTISHNVVANIVRPSGICKATLFAFRVRILHIVLCIS 51
P++TV A+ VS + N+V G F + +R L IV +S
Sbjct: 219 PVVTVVAAEGVSVACTSNSTNLVESDGELYCVWFRYPIRCLRIVARVS 266
>06_01_0165 + 1288107-1290476
Length = 789
Score = 27.1 bits (57), Expect = 3.9
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = -3
Query: 339 NIYKYIWNFDSISLVNWYKTGMAIMY 262
NIY+ IW F L NW+ + +Y
Sbjct: 453 NIYEEIWEFIVCILSNWFMVSLIHLY 478
>02_01_0777 - 5785295-5787370,5787723-5788769
Length = 1040
Score = 27.1 bits (57), Expect = 3.9
Identities = 23/56 (41%), Positives = 30/56 (53%)
Frame = -1
Query: 263 TSKSTPSATAVKSSTQHAPYVTSPIITVSASVNVSTISHNVVANIVRPSGICKATL 96
T+KSTPS VKS +H Y S + + ++ SH VV IV SGI K+ L
Sbjct: 146 TAKSTPSLVRVKS--EHG-YPVSKKCSYVRELLINDGSHRVVL-IVGLSGIGKSCL 197
>02_05_1225 +
35060642-35060815,35061254-35061802,35062284-35062348,
35062417-35062957,35063321-35064610
Length = 872
Score = 26.6 bits (56), Expect = 5.1
Identities = 16/37 (43%), Positives = 18/37 (48%)
Frame = -1
Query: 227 SSTQHAPYVTSPIITVSASVNVSTISHNVVANIVRPS 117
SS HA T+ SASV+V SH N RPS
Sbjct: 136 SSCVHADRTTNQAEDSSASVSVGVNSHQQPNNSTRPS 172
>11_06_0145 - 20615044-20617167,20617444-20618076
Length = 918
Score = 26.2 bits (55), Expect = 6.7
Identities = 11/29 (37%), Positives = 19/29 (65%), Gaps = 5/29 (17%)
Frame = -3
Query: 243 CYSCKVIYTACS--ICD---ISHNNRVSI 172
CY+ +V++TACS +CD + NR+ +
Sbjct: 270 CYNRRVVFTACSSHVCDQMNVEVENRIEV 298
>04_01_0556 -
7156851-7157096,7157288-7157530,7158112-7158153,
7158324-7158425,7159209-7159342,7161071-7161131,
7161192-7161284,7161557-7161639,7161984-7162239
Length = 419
Score = 26.2 bits (55), Expect = 6.7
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = -1
Query: 266 CTSKSTPSATAVKSSTQHAPYVTSPIITVS 177
C ST + + K Q Y SPIIT++
Sbjct: 86 CKKNSTSGSKSPKKKRQKGDYAGSPIITIA 115
>12_02_0890 +
24040981-24041125,24041264-24041317,24042675-24042872,
24043367-24043635
Length = 221
Score = 25.8 bits (54), Expect = 8.9
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = -3
Query: 243 CYSCKVIYTACSICDISHNNRVSISKC 163
C C +YTA S SH R SKC
Sbjct: 172 CVHCSKVYTAKSTNGTSHLRRHLTSKC 198
>09_04_0695 -
19547101-19548010,19548089-19548587,19549461-19549728,
19551025-19551687,19551849-19552060,19552203-19552593,
19552659-19553107,19553454-19553790
Length = 1242
Score = 25.8 bits (54), Expect = 8.9
Identities = 11/30 (36%), Positives = 14/30 (46%)
Frame = -3
Query: 246 KCYSCKVIYTACSICDISHNNRVSISKCFY 157
+CY CK S C + N+ SI C Y
Sbjct: 119 RCYICKRSGHISSGCPSKYKNKPSIFSCIY 148
>07_03_1575 - 27848977-27849095,27849254-27849302,27850270-27850287,
27850798-27851786,27852119-27852733,27852893-27852921,
27853990-27854453,27854530-27854654,27854743-27855025,
27855112-27856102,27856965-27857576,27857666-27858630
Length = 1752
Score = 25.8 bits (54), Expect = 8.9
Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = -3
Query: 246 KCYSCKVIYTACSIC-DISHNNRVSIS 169
KCYS + IY AC C D H + SI+
Sbjct: 1346 KCYSGESIYIACEDCGDWFHGDIYSIT 1372
>05_06_0240 -
26629218-26629323,26629412-26629490,26629656-26629761,
26629844-26629947,26630069-26630168,26630256-26630351,
26630464-26630541,26630603-26630671,26630766-26630846,
26630879-26630935,26631016-26631105,26631192-26631278,
26631690-26631794,26631899-26631994,26632222-26632397,
26632847-26633006,26633151-26633600
Length = 679
Score = 25.8 bits (54), Expect = 8.9
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -1
Query: 221 TQHAPYVTSPIITVSASVNVSTISHNVVANIVR 123
+ AP VT +TV+ S+ + NV AN+V+
Sbjct: 159 SHRAPKVTKDGVTVAKSIEFEDSAKNVGANLVK 191
>02_04_0012 -
18891917-18893091,18893209-18893323,18893425-18893477,
18893553-18893813,18896451-18896501,18896629-18896877,
18897046-18897268,18897371-18897487
Length = 747
Score = 25.8 bits (54), Expect = 8.9
Identities = 16/67 (23%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
Frame = -1
Query: 248 PSATAVKSSTQHAPYVTSPIITVSASV-NVS-TISHNVVANIVRPSGICKATLFAFRVRI 75
P V +S ++ V P + V +V+ T++ ANI GIC +F+ +
Sbjct: 396 PRVEVVHTSNKYEGQVYIPEVNFLIGVASVAITVAFQTTANIGNAYGICVVMVFSITTHL 455
Query: 74 LHIVLCI 54
+ +V+ +
Sbjct: 456 MTVVMLL 462
>01_06_0360 - 28729006-28729446,28729810-28730258,28730499-28731480
Length = 623
Score = 25.8 bits (54), Expect = 8.9
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = +1
Query: 202 TYGACCVDDFTAVALGVDLLVHYGHSC 282
TYGA V T LGV+ V + SC
Sbjct: 82 TYGAVAVQVLTTSPLGVEAFVWFRSSC 108
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,944,599
Number of Sequences: 37544
Number of extensions: 168749
Number of successful extensions: 410
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 401
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 408
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 482105440
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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