Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_B01
         (142 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1105.02c |lys4||homocitrate synthase |Schizosaccharomyces po...    23   4.2  
SPBC660.07 |ntp1||alpha,alpha-trehalase Ntp1|Schizosaccharomyces...    23   5.5  
SPCC1919.13c |||conserved eukaryotic protein|Schizosaccharomyces...    23   5.5  
SPAC222.13c |||6-phosphofructo-2-kinase |Schizosaccharomyces pom...    23   7.3  
SPAC1786.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    22   9.6  

>SPBC1105.02c |lys4||homocitrate synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 418

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -1

Query: 55  VDPARVELEGGLRGVDLV 2
           +D ARV +E G+ GVD+V
Sbjct: 108 MDDARVAVETGVDGVDVV 125


>SPBC660.07 |ntp1||alpha,alpha-trehalase Ntp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 735

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -1

Query: 55  VDPARVELEGGLRGVDL 5
           VDP RVE E G +GV++
Sbjct: 660 VDPHRVEAEYGNQGVNI 676


>SPCC1919.13c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 282

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 10/36 (27%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = -1

Query: 118 RQYPTTKHAV--LELGGGAVLVEVDPARVELEGGLR 17
           ++YP     +  +E+ GG V+ E+D  ++ L   L+
Sbjct: 98  QKYPDAAEYISKIEINGGKVMHEIDATKLHLHKKLK 133


>SPAC222.13c |||6-phosphofructo-2-kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 592

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = -1

Query: 133 RLRRPRQYPTTKHAVLELGG 74
           RLRRP ++P  + + +++ G
Sbjct: 103 RLRRPGRFPVRQESTIDIPG 122


>SPAC1786.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 111

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -1

Query: 133 RLRRPRQYPTTKHAVLE 83
           ++  PRQ P+T HA+ E
Sbjct: 85  KIDEPRQLPSTHHALPE 101


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 337,507
Number of Sequences: 5004
Number of extensions: 2838
Number of successful extensions: 13
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 2,362,478
effective HSP length: 27
effective length of database: 2,227,370
effective search space used: 42320030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)