Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_B01
(142 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0220 - 19434011-19434802 29 0.69
01_07_0339 + 42848065-42848943,42849308-42849526 28 0.91
01_06_1730 + 39494738-39495853 28 0.91
11_02_0100 - 8298182-8298448,8298607-8298747,8299002-8299237,829... 27 2.1
04_01_0560 - 7183253-7183839,7183935-7184367 27 2.1
01_03_0123 - 12728636-12729246,12729336-12729738 27 2.8
08_02_1557 + 27867977-27869134 26 3.7
05_03_0307 + 12027505-12027565,12028300-12028925 26 3.7
05_01_0064 + 454786-455646,456537-456752 26 3.7
01_03_0212 + 13842142-13842634,13842727-13843319 26 3.7
01_03_0211 - 13830871-13831463,13831549-13831915 26 3.7
01_03_0210 + 13825272-13825707,13825794-13826386 26 3.7
01_03_0209 - 13820980-13821572,13821665-13822157 26 3.7
01_03_0124 + 12734846-12735356,12735449-12736041 26 3.7
01_01_0820 - 6395150-6395769,6395865-6396294 26 3.7
07_03_0728 + 21019596-21020141 26 4.8
03_06_0518 - 34474776-34474865,34475168-34475437,34475536-344758... 26 4.8
11_01_0479 - 3695245-3696588,3696705-3696965 25 6.4
04_01_0548 + 7103540-7103972,7104081-7104667 25 6.4
04_01_0537 + 6970887-6971319,6971428-6971540,6971552-6972016 25 6.4
12_02_1215 + 27070164-27070302,27070308-27071098 25 8.4
10_08_0507 + 18401266-18401341,18401448-18401633,18401918-184019... 25 8.4
>01_05_0220 - 19434011-19434802
Length = 263
Score = 28.7 bits (61), Expect = 0.69
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -1
Query: 106 TTKHAVLELGGGAVLVEVDPARVELEGGLR 17
T K++ LGGG V V + PA GG+R
Sbjct: 40 TVKYSTRRLGGGGVAVPLQPAAPHGGGGIR 69
>01_07_0339 + 42848065-42848943,42849308-42849526
Length = 365
Score = 28.3 bits (60), Expect = 0.91
Identities = 15/28 (53%), Positives = 18/28 (64%)
Frame = +2
Query: 8 VDASQTTFQFYSSGVYFD*NCSSTELEH 91
++AS FQFYS GV FD C T L+H
Sbjct: 281 IEASGRNFQFYSGGV-FDGPC-GTRLDH 306
>01_06_1730 + 39494738-39495853
Length = 371
Score = 28.3 bits (60), Expect = 0.91
Identities = 14/28 (50%), Positives = 19/28 (67%)
Frame = +2
Query: 8 VDASQTTFQFYSSGVYFD*NCSSTELEH 91
+DA +FQFYS GV F +C T+L+H
Sbjct: 271 IDAGDQSFQFYSDGV-FAGDC-GTDLDH 296
>11_02_0100 -
8298182-8298448,8298607-8298747,8299002-8299237,
8299251-8299362
Length = 251
Score = 27.1 bits (57), Expect = 2.1
Identities = 15/28 (53%), Positives = 18/28 (64%)
Frame = +2
Query: 8 VDASQTTFQFYSSGVYFD*NCSSTELEH 91
V+AS FQFYS GV F C T+L+H
Sbjct: 151 VEASGQDFQFYSEGV-FTGEC-GTDLDH 176
>04_01_0560 - 7183253-7183839,7183935-7184367
Length = 339
Score = 27.1 bits (57), Expect = 2.1
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = +2
Query: 8 VDASQTTFQFYSSGVYFD*NCSSTELEH 91
VD TFQFYS GV +C T+L+H
Sbjct: 257 VDGGDMTFQFYSGGVMTG-SC-GTDLDH 282
>01_03_0123 - 12728636-12729246,12729336-12729738
Length = 337
Score = 26.6 bits (56), Expect = 2.8
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = +2
Query: 8 VDASQTTFQFYSSGVY 55
VDAS FQFY SGV+
Sbjct: 251 VDASGPAFQFYGSGVF 266
>08_02_1557 + 27867977-27869134
Length = 385
Score = 26.2 bits (55), Expect = 3.7
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = +2
Query: 8 VDASQTTFQFYSSGVYFD*NCSSTELEH 91
++A + FQFYS GV F C TEL+H
Sbjct: 272 IEAGGSHFQFYSEGV-FAGKC-GTELDH 297
>05_03_0307 + 12027505-12027565,12028300-12028925
Length = 228
Score = 26.2 bits (55), Expect = 3.7
Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = -1
Query: 121 PRQYPTTKHAV-LELGGGAVLVEVDPARVELEGGL 20
PR TTK A E GGGA V+ PA + GG+
Sbjct: 130 PRSTATTKKAAGAEEGGGAARVDGVPAVGDRNGGV 164
>05_01_0064 + 454786-455646,456537-456752
Length = 358
Score = 26.2 bits (55), Expect = 3.7
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = +2
Query: 8 VDASQTTFQFYSSGVYFD*NCSSTELEH 91
++AS FQFYS GV FD C +L+H
Sbjct: 275 IEASGRHFQFYSGGV-FDGPCGE-QLDH 300
>01_03_0212 + 13842142-13842634,13842727-13843319
Length = 361
Score = 26.2 bits (55), Expect = 3.7
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = +2
Query: 8 VDASQTTFQFYSSGVY 55
+DAS FQFY GVY
Sbjct: 278 IDASAQEFQFYKGGVY 293
>01_03_0211 - 13830871-13831463,13831549-13831915
Length = 319
Score = 26.2 bits (55), Expect = 3.7
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +2
Query: 8 VDASQTTFQFYSSGVY 55
+DAS FQFY SGV+
Sbjct: 236 IDASGPAFQFYKSGVF 251
>01_03_0210 + 13825272-13825707,13825794-13826386
Length = 342
Score = 26.2 bits (55), Expect = 3.7
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +2
Query: 8 VDASQTTFQFYSSGVY 55
+DAS FQFY SGV+
Sbjct: 259 IDASGPAFQFYKSGVF 274
>01_03_0209 - 13820980-13821572,13821665-13822157
Length = 361
Score = 26.2 bits (55), Expect = 3.7
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = +2
Query: 8 VDASQTTFQFYSSGVY 55
+DAS FQFY GVY
Sbjct: 278 IDASAQEFQFYKGGVY 293
>01_03_0124 + 12734846-12735356,12735449-12736041
Length = 367
Score = 26.2 bits (55), Expect = 3.7
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = +2
Query: 8 VDASQTTFQFYSSGVY 55
+DAS FQFY GVY
Sbjct: 284 IDASAPEFQFYKGGVY 299
>01_01_0820 - 6395150-6395769,6395865-6396294
Length = 349
Score = 26.2 bits (55), Expect = 3.7
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +2
Query: 8 VDASQTTFQFYSSGVY 55
+DAS FQFY SGV+
Sbjct: 257 IDASGPAFQFYGSGVF 272
>07_03_0728 + 21019596-21020141
Length = 181
Score = 25.8 bits (54), Expect = 4.8
Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = -1
Query: 118 RQYPTTKHAVLELGGGAVLVE-VDPARVE 35
R P ++HAV+ LGGGA V D R E
Sbjct: 116 RLCPYSRHAVVHLGGGACSVRYYDVERTE 144
>03_06_0518 -
34474776-34474865,34475168-34475437,34475536-34475831,
34475924-34476013,34476172-34476337,34476399-34476679,
34476881-34477217
Length = 509
Score = 25.8 bits (54), Expect = 4.8
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -1
Query: 109 PTTKHAVLELGGGAVLVEVDP 47
PTTK A+ GG V+V +DP
Sbjct: 386 PTTKWALQRFRGGEVVVAMDP 406
>11_01_0479 - 3695245-3696588,3696705-3696965
Length = 534
Score = 25.4 bits (53), Expect = 6.4
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = -1
Query: 121 PRQYPTTKHAVLELGGGAVLVEVD 50
PR YP +V GGGA L +D
Sbjct: 251 PRGYPERNRSVCVTGGGAALKFID 274
>04_01_0548 + 7103540-7103972,7104081-7104667
Length = 339
Score = 25.4 bits (53), Expect = 6.4
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +2
Query: 8 VDASQTTFQFYSSGVYFD*NCSSTELEH 91
VD TFQFY GV +C T+L+H
Sbjct: 257 VDGGDMTFQFYKGGVMTG-SC-GTDLDH 282
>04_01_0537 + 6970887-6971319,6971428-6971540,6971552-6972016
Length = 336
Score = 25.4 bits (53), Expect = 6.4
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +2
Query: 8 VDASQTTFQFYSSGVYFD*NCSSTELEH 91
VD TFQFY GV +C T+L+H
Sbjct: 254 VDGGDMTFQFYKGGVMTG-SC-GTDLDH 279
>12_02_1215 + 27070164-27070302,27070308-27071098
Length = 309
Score = 25.0 bits (52), Expect = 8.4
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = -1
Query: 94 AVLELGGGAVLVEVDPARVELEGGLR 17
AVL GGG + ++ +R +LEGG R
Sbjct: 53 AVLLGGGGGSVPQIRASRPDLEGGRR 78
>10_08_0507 +
18401266-18401341,18401448-18401633,18401918-18401953,
18402244-18402650,18402998-18403099,18403206-18403433
Length = 344
Score = 25.0 bits (52), Expect = 8.4
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = -1
Query: 109 PTTKHAVLELGGGAVLVEVDPARVELEGG 23
P+T HAV+ GG VE P RV G
Sbjct: 21 PSTAHAVVVSGGRGRGVECQPHRVRRRPG 49
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,672,013
Number of Sequences: 37544
Number of extensions: 31679
Number of successful extensions: 149
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 14,793,348
effective HSP length: 27
effective length of database: 13,779,660
effective search space used: 261813540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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