Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_B01
         (142 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92812-8|CAB07275.1|  337|Caenorhabditis elegans Hypothetical pr...    40   3e-04
Z95619-4|CAB09113.2|  397|Caenorhabditis elegans Hypothetical pr...    25   7.3  
Z81538-1|CAB04383.1|  569|Caenorhabditis elegans Hypothetical pr...    25   9.7  

>Z92812-8|CAB07275.1|  337|Caenorhabditis elegans Hypothetical
           protein T03E6.7 protein.
          Length = 337

 Score = 39.5 bits (88), Expect = 3e-04
 Identities = 15/28 (53%), Positives = 19/28 (67%)
 Frame = +2

Query: 8   VDASQTTFQFYSSGVYFD*NCSSTELEH 91
           +DA   +FQ Y  GVY+D  CSS EL+H
Sbjct: 256 IDAGHRSFQLYKKGVYYDEECSSEELDH 283


>Z95619-4|CAB09113.2|  397|Caenorhabditis elegans Hypothetical
           protein H21P03.2 protein.
          Length = 397

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -1

Query: 106 TTKHAVLELGGGAVLVEVD 50
           TT+  +LE+ GGAV+  VD
Sbjct: 112 TTRETLLEINGGAVIDPVD 130


>Z81538-1|CAB04383.1|  569|Caenorhabditis elegans Hypothetical
           protein F45H10.1 protein.
          Length = 569

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -1

Query: 106 TTKHAVLELGGGAVLVEVDPARVEL 32
           T K   LELGG A L+  D A +++
Sbjct: 259 TVKRVCLELGGNAPLIVFDDADLDV 283


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,957,819
Number of Sequences: 27780
Number of extensions: 17889
Number of successful extensions: 33
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33
length of database: 12,740,198
effective HSP length: 27
effective length of database: 11,990,138
effective search space used: 227812622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)