Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_B01
         (142 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g48340.1 68416.m05276 cysteine proteinase, putative similar t...    29   0.42 
At1g20850.1 68414.m02612 cysteine endopeptidase, papain-type (XC...    29   0.42 
At5g50260.1 68418.m06224 cysteine proteinase, putative similar t...    28   0.98 
At5g60360.1 68418.m07568 cysteine proteinase, putative / AALP pr...    27   1.3  
At5g43060.1 68418.m05256 cysteine proteinase, putative / thiol p...    27   1.3  
At4g11320.1 68417.m01828 cysteine proteinase, putative contains ...    27   1.7  
At4g11310.1 68417.m01827 cysteine proteinase, putative contains ...    27   1.7  
At1g29080.1 68414.m03560 peptidase C1A papain family protein con...    27   1.7  
At4g35350.1 68417.m05023 cysteine endopeptidase, papain-type (XC...    26   4.0  
At3g48350.1 68416.m05277 cysteine proteinase, putative similar t...    25   5.2  
At1g06260.1 68414.m00662 cysteine proteinase, putative contains ...    25   6.9  

>At3g48340.1 68416.m05276 cysteine proteinase, putative similar to
           cysteine endopeptidase precursor [Ricinus communis]
           GI:2944446; contains Pfam profile PF00112: Papain family
           cysteine protease
          Length = 351

 Score = 29.1 bits (62), Expect = 0.42
 Identities = 15/28 (53%), Positives = 18/28 (64%)
 Frame = +2

Query: 8   VDASQTTFQFYSSGVYFD*NCSSTELEH 91
           +DA  + FQFYS GV F  +C  TEL H
Sbjct: 253 IDAGSSDFQFYSEGV-FTGSC-GTELNH 278


>At1g20850.1 68414.m02612 cysteine endopeptidase, papain-type (XCP2)
           identical to papain-type cysteine endopeptidase XCP2
           GI:6708183 from [Arabidopsis thaliana]
          Length = 356

 Score = 29.1 bits (62), Expect = 0.42
 Identities = 15/28 (53%), Positives = 18/28 (64%)
 Frame = +2

Query: 8   VDASQTTFQFYSSGVYFD*NCSSTELEH 91
           +DAS   FQFYS GV FD  C   +L+H
Sbjct: 273 IDASGREFQFYSGGV-FDGRC-GVDLDH 298


>At5g50260.1 68418.m06224 cysteine proteinase, putative similar to
           cysteine endopeptidase precursor CysEP GI:2944446 from
           [Ricinus communis]
          Length = 361

 Score = 27.9 bits (59), Expect = 0.98
 Identities = 15/28 (53%), Positives = 17/28 (60%)
 Frame = +2

Query: 8   VDASQTTFQFYSSGVYFD*NCSSTELEH 91
           +DA  + FQFYS GV F   C  TEL H
Sbjct: 261 IDAGGSDFQFYSEGV-FTGRC-GTELNH 286


>At5g60360.1 68418.m07568 cysteine proteinase, putative / AALP
           protein (AALP) identical to AALP protein GI:7230640 from
           [Arabidopsis thaliana]; similar to barley aleurain
          Length = 358

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +2

Query: 26  TFQFYSSGVYFD*NCSSTELE 88
           +F+ Y SGVY D +C ST ++
Sbjct: 282 SFRLYKSGVYTDSHCGSTPMD 302


>At5g43060.1 68418.m05256 cysteine proteinase, putative / thiol
           protease, putative similar to cysteine proteinase RD21A
           precursor (thiol protease) GI:435619, SP:P43297 from
           [Arabidopsis thaliana]
          Length = 463

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 15/28 (53%), Positives = 18/28 (64%)
 Frame = +2

Query: 8   VDASQTTFQFYSSGVYFD*NCSSTELEH 91
           ++A    FQ YSSGV FD  C  TEL+H
Sbjct: 273 IEAGGRAFQLYSSGV-FDGLC-GTELDH 298


>At4g11320.1 68417.m01828 cysteine proteinase, putative contains
           similarity to cysteine proteinase RD21A (thiol protease)
           GI:435619, SP:P43297 from [Arabidopsis thaliana]
          Length = 371

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 15/28 (53%), Positives = 16/28 (57%)
 Frame = +2

Query: 8   VDASQTTFQFYSSGVYFD*NCSSTELEH 91
           VD+S   FQ Y SGV FD  C  T L H
Sbjct: 279 VDSSSREFQLYESGV-FDGTC-GTNLNH 304


>At4g11310.1 68417.m01827 cysteine proteinase, putative contains
           similarity to cysteine proteinase RD21A (thiol protease)
           GI:435619, SP:P43297 from [Arabidopsis thaliana]
          Length = 364

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = +2

Query: 8   VDASQTTFQFYSSGVYFD*NCSSTELEH 91
           +D+S   FQ Y SGV FD +C  T L H
Sbjct: 272 IDSSSREFQLYESGV-FDGSC-GTNLNH 297


>At1g29080.1 68414.m03560 peptidase C1A papain family protein
           contains similarity to cysteine protease SPCP1
           GI:13491750 from [Ipomoea batatas]; contains Pfam
           profile PF00112: Papain family cysteine protease
          Length = 346

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +2

Query: 8   VDASQTTFQFYSSGVYFD*NCSSTELEH 91
           +DAS+  F  YS GVY   NC  T + H
Sbjct: 263 IDASEAGFVHYSGGVYNARNC-GTSVNH 289


>At4g35350.1 68417.m05023 cysteine endopeptidase, papain-type (XCP1)
           identical to papain-type cysteine endopeptidase XCP1
           GI:6708181 from [Arabidopsis thaliana]
          Length = 355

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +2

Query: 8   VDASQTTFQFYSSGVYFD*NCSSTELEH 91
           ++AS   FQFY  GV F+  C  T+L+H
Sbjct: 272 IEASGRDFQFYKGGV-FNGKC-GTDLDH 297


>At3g48350.1 68416.m05277 cysteine proteinase, putative similar to
           cysteine endopeptidase precursor [Ricinus communis]
           GI:2944446; contains Pfam profile PF00112: Papain family
           cysteine protease
          Length = 364

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +2

Query: 8   VDASQTTFQFYSSGVYFD*NCSSTELEH 91
           +DA  + FQ YS GV+    C  T+L H
Sbjct: 262 IDAGSSDFQLYSEGVFIG-EC-GTQLNH 287


>At1g06260.1 68414.m00662 cysteine proteinase, putative contains
           similarity to thiol-protease, pre-pro-TPE4A protein
           GI:3688528 [Pisum sativum]
          Length = 343

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = +2

Query: 8   VDASQTTFQFYSSGVYFD*NCSSTELEH 91
           +DA    FQ YSSGV+   N   T L H
Sbjct: 262 IDAGGFIFQLYSSGVFT--NYCGTNLNH 287


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,929,555
Number of Sequences: 28952
Number of extensions: 18464
Number of successful extensions: 60
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 12,070,560
effective HSP length: 27
effective length of database: 11,288,856
effective search space used: 214488264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)