Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_A24
         (70 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    19   7.3  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          18   9.6  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      18   9.6  

>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 18.6 bits (36), Expect = 7.3
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -1

Query: 52  RPHSDVINSLYFM 14
           R  +DV+N LYF+
Sbjct: 73  RDINDVLNVLYFI 85


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 18.2 bits (35), Expect = 9.6
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +3

Query: 3   TRESIKYKEFI 35
           T+ S KYKE+I
Sbjct: 190 TKTSGKYKEYI 200


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 18.2 bits (35), Expect = 9.6
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +3

Query: 3   TRESIKYKEFI 35
           T+ S KYKE+I
Sbjct: 190 TKTSGKYKEYI 200


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,458
Number of Sequences: 438
Number of extensions: 168
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 4
effective length of database: 144,591
effective search space used:  2602638
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)