Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_A22
         (271 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    21   1.8  
AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       19   9.5  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    19   9.5  

>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 21.4 bits (43), Expect = 1.8
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -2

Query: 252 RPLGVATTHKTNTSKL 205
           RP G  T H +NTS L
Sbjct: 249 RPTGNITPHGSNTSSL 264


>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 19.0 bits (37), Expect = 9.5
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +2

Query: 89  KISSFQLICLLNYEVQL*DI 148
           KI++FQ IC   +E  L +I
Sbjct: 86  KINAFQCICKEGWEGALCNI 105


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 19.0 bits (37), Expect = 9.5
 Identities = 5/8 (62%), Positives = 7/8 (87%)
 Frame = +1

Query: 220 GFVCGSYP 243
           GF+C +YP
Sbjct: 168 GFLCNNYP 175


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 64,252
Number of Sequences: 336
Number of extensions: 1114
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 47
effective length of database: 106,793
effective search space used:  4485306
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)