Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_A22
         (271 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1 |S...    24   4.3  
SPBC18H10.05 |||WD repeat protein Wdr44 family, WD repeat protei...    23   5.7  
SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces pomb...    23   5.7  
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar...    23   9.9  

>SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1842

 Score = 23.8 bits (49), Expect = 4.3
 Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = -3

Query: 161 GKKK*CLIIVPHNSISKS-IEMMISF 87
           G +  CLI+VP N  SK+ +E +I +
Sbjct: 686 GSRGSCLIVVPFNQGSKTDVEALIDY 711


>SPBC18H10.05 |||WD repeat protein Wdr44 family, WD repeat
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 586

 Score = 23.4 bits (48), Expect = 5.7
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = -3

Query: 146 CLIIVPHNSISKSIEMMISFKNNIQHVTGITHIL 45
           C  I+P++S S ++ ++ +  N I+    +TH L
Sbjct: 394 CASIIPNDSKSDNVVLVSTNDNAIRLYNTVTHAL 427


>SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 983

 Score = 23.4 bits (48), Expect = 5.7
 Identities = 6/20 (30%), Positives = 15/20 (75%)
 Frame = -2

Query: 69  CNRNNAHPQTSQLEHSVIII 10
           CN  ++HP+T+Q+ ++  ++
Sbjct: 354 CNTKSSHPETAQVLYNSFLV 373


>SPAC57A7.04c |pabp||mRNA export shuttling protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 653

 Score = 22.6 bits (46), Expect = 9.9
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +1

Query: 184 VQVGKHTKLRGIGFVCGSYPKRAS 255
           +   +  K +G GFVC + P+ A+
Sbjct: 395 IMTDEQGKSKGFGFVCYTTPEEAN 418


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,094,130
Number of Sequences: 5004
Number of extensions: 17972
Number of successful extensions: 43
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 57602552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)