Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_A22
         (271 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0788 + 20553587-20553726,20554131-20554196,20554695-205549...    30   0.29 
11_06_0564 - 25022353-25022546,25022654-25022894,25022936-250230...    27   2.7  
11_06_0560 - 24978894-24979030,24979106-24979310,24979421-249797...    27   2.7  
04_01_0619 - 8125611-8127967,8128449-8130123                           27   2.7  
07_03_1345 + 25919379-25920866,25921342-25921962,25922733-259228...    26   4.7  
01_06_0726 + 31514480-31514932                                         25   6.3  
01_06_0087 + 26299692-26299971,26301721-26301933,26302027-263024...    25   6.3  
04_04_1550 - 34332948-34335986                                         25   8.3  

>10_08_0788 +
           20553587-20553726,20554131-20554196,20554695-20554926,
           20555033-20555237,20555335-20555441
          Length = 249

 Score = 29.9 bits (64), Expect = 0.29
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +3

Query: 24  NVLIGTFEDVRYSCYMLDIIFKRYHHFN 107
           NV+    ED+ + C + D   K YHH+N
Sbjct: 146 NVVEYELEDISHQCLIFDDCAKSYHHYN 173


>11_06_0564 -
           25022353-25022546,25022654-25022894,25022936-25023041,
           25023341-25023565,25023704-25023793,25025001-25025120,
           25025210-25025356,25026282-25026490
          Length = 443

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 7/21 (33%), Positives = 15/21 (71%)
 Frame = +3

Query: 45  EDVRYSCYMLDIIFKRYHHFN 107
           ++++Y C+ +D   K +HH+N
Sbjct: 318 DELQYQCFSVDAYQKIFHHYN 338


>11_06_0560 -
           24978894-24979030,24979106-24979310,24979421-24979748,
           24980024-24980116,24980287-24980406,24982786-24982916
          Length = 337

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 7/22 (31%), Positives = 16/22 (72%)
 Frame = +3

Query: 42  FEDVRYSCYMLDIIFKRYHHFN 107
           F+++ + C+ ++  +K +HHFN
Sbjct: 230 FDELLHQCFNVEHYYKIFHHFN 251


>04_01_0619 - 8125611-8127967,8128449-8130123
          Length = 1343

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -3

Query: 128 HNSISKSIEMMISFKNNIQHVTGITHILKRP 36
           HNSIS  I + +   +N+ H+  IT+ L  P
Sbjct: 163 HNSISGQIPLELQKLHNLTHIDFITNYLTGP 193


>07_03_1345 + 25919379-25920866,25921342-25921962,25922733-25922893,
            25923284-25923422,25923509-25923592,25923944-25923982,
            25924037-25924222,25924347-25924478,25924810-25925009,
            25925294-25925498,25925618-25925944
          Length = 1193

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -2

Query: 228  HKTNTSKLSVFTNLDHILT*HLG*KKVMSYN 136
            H+     ++VFT++D   T H G + ++SYN
Sbjct: 1054 HRELNDVITVFTSMDCPATIHFGLQYLLSYN 1084


>01_06_0726 + 31514480-31514932
          Length = 150

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +2

Query: 167 C*VKMWSRLVNTLSLEVLVLCVVATPSG 250
           C  + W RL+  L+ E   +C  ++PSG
Sbjct: 71  CGHRAWRRLLRRLAQETRCICSSSSPSG 98


>01_06_0087 +
           26299692-26299971,26301721-26301933,26302027-26302464,
           26304500-26304708
          Length = 379

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -3

Query: 233 PHTKPIPLSLVCLPT 189
           PH  P+PL+  C PT
Sbjct: 365 PHASPVPLAKTCPPT 379


>04_04_1550 - 34332948-34335986
          Length = 1012

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +2

Query: 209  LEVLVLCVVATPSGRP 256
            LE+ +LCV A P  RP
Sbjct: 982  LEIALLCVTAAPKSRP 997


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,566,937
Number of Sequences: 37544
Number of extensions: 99733
Number of successful extensions: 159
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 14,793,348
effective HSP length: 68
effective length of database: 12,240,356
effective search space used: 257047476
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)