Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_A22
         (271 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11809| Best HMM Match : Rabaptin (HMM E-Value=0.8)                  29   0.78 
SB_27155| Best HMM Match : Dynein_heavy (HMM E-Value=1.1e-09)          27   3.1  
SB_6123| Best HMM Match : MutS_III (HMM E-Value=1.8e-09)               25   9.5  
SB_28937| Best HMM Match : 7tm_1 (HMM E-Value=2.1e-08)                 25   9.5  

>SB_11809| Best HMM Match : Rabaptin (HMM E-Value=0.8)
          Length = 1009

 Score = 28.7 bits (61), Expect = 0.78
 Identities = 10/32 (31%), Positives = 22/32 (68%)
 Frame = -3

Query: 128 HNSISKSIEMMISFKNNIQHVTGITHILKRPN 33
           +N +SK+   ++ FK  I+H++ ++ +LK+ N
Sbjct: 387 YNQMSKTPMSLVMFKFAIEHISRVSRVLKQDN 418


>SB_27155| Best HMM Match : Dynein_heavy (HMM E-Value=1.1e-09)
          Length = 1248

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 11/32 (34%), Positives = 21/32 (65%)
 Frame = -3

Query: 128 HNSISKSIEMMISFKNNIQHVTGITHILKRPN 33
           +N  SK+   ++ F+  I+HV+ I  +L++PN
Sbjct: 9   YNISSKAPMDLVMFRFAIEHVSRICRVLRQPN 40


>SB_6123| Best HMM Match : MutS_III (HMM E-Value=1.8e-09)
          Length = 730

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 11/38 (28%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +1

Query: 130 GTIIRH-YFFLPEMLS*NVVQVGKHTKLRGIGFVCGSY 240
           G I R  ++FL E+ +  V ++  HT+++ +  +C  Y
Sbjct: 3   GVITRSSFYFLTELTAERVQRLLSHTRMKEVSRICKVY 40


>SB_28937| Best HMM Match : 7tm_1 (HMM E-Value=2.1e-08)
          Length = 1258

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +1

Query: 142  RHYFFLPEMLS*NVVQVG 195
            +HYFFL  ++S N+V VG
Sbjct: 1110 KHYFFLKVLMSLNMVIVG 1127


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,997,274
Number of Sequences: 59808
Number of extensions: 127468
Number of successful extensions: 148
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 16,821,457
effective HSP length: 66
effective length of database: 12,874,129
effective search space used: 296104967
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)