Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_A22
         (271 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    22   1.2  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    22   1.2  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    22   1.5  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    21   2.7  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    21   2.7  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    21   2.7  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   3.6  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    20   4.7  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           19   8.2  

>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.2 bits (45), Expect = 1.2
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +3

Query: 57  YSCYMLDIIFKR 92
           YSC  +D++FKR
Sbjct: 228 YSCLKVDLLFKR 239


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.2 bits (45), Expect = 1.2
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +3

Query: 57  YSCYMLDIIFKR 92
           YSC  +D++FKR
Sbjct: 228 YSCLKVDLLFKR 239


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.8 bits (44), Expect = 1.5
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +3

Query: 45  EDVRYSCYMLDIIFKRYHHF 104
           E   YSC  +D+IF R   F
Sbjct: 283 EQGNYSCLKVDLIFTRDRAF 302


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.0 bits (42), Expect = 2.7
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +3

Query: 57  YSCYMLDIIFKRYHHF 104
           YSC  +D+IF R   F
Sbjct: 256 YSCLKVDLIFTRDRAF 271


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.0 bits (42), Expect = 2.7
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +3

Query: 57  YSCYMLDIIFKRYHHF 104
           YSC  +D+IF R   F
Sbjct: 307 YSCLKVDLIFTRDRAF 322


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 21.0 bits (42), Expect = 2.7
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +3

Query: 57  YSCYMLDIIFKRYHHF 104
           YSC  +D+IF R   F
Sbjct: 256 YSCLKVDLIFTRDRAF 271


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 20.6 bits (41), Expect = 3.6
 Identities = 6/17 (35%), Positives = 11/17 (64%)
 Frame = -1

Query: 190  PGPHFNLTSRVKKSNVL 140
            PG ++N   R+K+  V+
Sbjct: 1657 PGSNYNTCDRIKRGTVI 1673


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 20.2 bits (40), Expect = 4.7
 Identities = 8/18 (44%), Positives = 11/18 (61%), Gaps = 1/18 (5%)
 Frame = -1

Query: 262 FLRTPAWGSYH-TQNQYL 212
           FL+T AW   H  + Q+L
Sbjct: 120 FLKTAAWARVHVNEGQFL 137


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 19.4 bits (38), Expect = 8.2
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = +1

Query: 139 IRHYFFLPEMLS 174
           I+H+FF P+ L+
Sbjct: 348 IQHHFFYPDPLA 359


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 76,873
Number of Sequences: 438
Number of extensions: 1309
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 48
effective length of database: 125,319
effective search space used:  5138079
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)