Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_A22
         (271 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g34315.1 68415.m04200 disease resistance protein-related simi...    26   3.0  
At3g42580.1 68416.m04420 Ulp1 protease family protein contains P...    25   6.8  
At4g15720.1 68417.m02393 pentatricopeptide (PPR) repeat-containi...    25   9.0  

>At2g34315.1 68415.m04200 disease resistance protein-related
          similar to SP|P54120 AIG1 protein {Arabidopsis
          thaliana}
          Length = 246

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = -2

Query: 72 TCNRNNAHPQTSQLEHSV 19
          T N+N+ HP T Q+EH++
Sbjct: 39 TQNQNSGHPYTHQVEHAL 56


>At3g42580.1 68416.m04420 Ulp1 protease family protein contains Pfam
           profile PF02902: Ulp1 protease family, C-terminal
           catalytic domain
          Length = 903

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +1

Query: 184 VQVGKHTKLRGIGFVCGSYPKRASLE 261
           +++G     R  G  CG+YPK +++E
Sbjct: 99  IRLGLREWARLTGLECGTYPKNSAIE 124


>At4g15720.1 68417.m02393 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 616

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -2

Query: 228 HKTNTSKLSVFTNLDHILT*HLG 160
           HK + S  + FTNL H LT  LG
Sbjct: 37  HKLSESTNAAFTNLLHTLTLKLG 59


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,471,335
Number of Sequences: 28952
Number of extensions: 87228
Number of successful extensions: 140
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 12,070,560
effective HSP length: 68
effective length of database: 10,101,824
effective search space used: 212138304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)