Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_A20
(289 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q4KTB1 Cluster: S30-ubiquitin-like; n=4; Metazoa|Rep: S... 74 7e-13
UniRef50_UPI0000F33F66 Cluster: UPI0000F33F66 related cluster; n... 62 2e-09
UniRef50_Q18231 Cluster: Ribosomal protein, small subunit protei... 48 3e-05
UniRef50_UPI0000EB013B Cluster: UPI0000EB013B related cluster; n... 40 0.008
UniRef50_UPI00005A3817 Cluster: PREDICTED: similar to UBIQUITIN-... 39 0.019
UniRef50_Q5D8K9 Cluster: SJCHGC02785 protein; n=1; Schistosoma j... 36 0.23
UniRef50_P49689 Cluster: 40S ribosomal protein S30; n=4; Magnoli... 36 0.23
UniRef50_O42952 Cluster: 40S ribosomal protein S30; n=37; Eukary... 34 0.53
UniRef50_UPI0000EB4B7C Cluster: UPI0000EB4B7C related cluster; n... 34 0.70
UniRef50_Q4Q7P0 Cluster: 40S ribosomal protein S30, putative; n=... 34 0.70
UniRef50_Q22X50 Cluster: Ubiquitin family protein; n=2; Tetrahym... 34 0.70
UniRef50_A0CBZ8 Cluster: Chromosome undetermined scaffold_166, w... 33 0.92
UniRef50_A6NDN8 Cluster: Uncharacterized protein ENSP00000310146... 33 0.92
UniRef50_Q54MD2 Cluster: Putative uncharacterized protein; n=3; ... 33 1.2
UniRef50_Q9W6Y0 Cluster: 40S ribosomal protein S30; n=30; Eukary... 33 1.2
UniRef50_P62861 Cluster: 40S ribosomal protein S30; n=74; root|R... 33 1.2
UniRef50_Q9C8Z4 Cluster: Uncharacterized protein At3g06530; n=3;... 33 1.6
UniRef50_A1DL63 Cluster: Ribosomal S30/ubiquitin fusion; n=2; Tr... 32 2.1
UniRef50_UPI0000E25D9C Cluster: PREDICTED: similar to putative D... 31 3.7
UniRef50_Q3LW43 Cluster: Ribosomal protein S30; n=1; Bigelowiell... 31 3.7
UniRef50_Q7QSI8 Cluster: GLP_195_35027_25878; n=1; Giardia lambl... 31 3.7
UniRef50_A4RDH0 Cluster: Putative uncharacterized protein; n=1; ... 31 4.9
UniRef50_Q4RJR5 Cluster: Chromosome 13 SCAF15035, whole genome s... 31 6.5
UniRef50_A5TTR4 Cluster: Putative uncharacterized protein; n=3; ... 31 6.5
UniRef50_A6GRM2 Cluster: Putative uncharacterized protein; n=1; ... 30 8.6
UniRef50_A6CNP8 Cluster: Thermophilic serine proteinase; n=1; Ba... 30 8.6
UniRef50_A1G407 Cluster: Peptidase S8 and S53, subtilisin, kexin... 30 8.6
UniRef50_Q5Z960 Cluster: Putative uncharacterized protein P0659D... 30 8.6
>UniRef50_Q4KTB1 Cluster: S30-ubiquitin-like; n=4; Metazoa|Rep:
S30-ubiquitin-like - Suberites domuncula (Sponge)
Length = 134
Score = 73.7 bits (173), Expect = 7e-13
Identities = 38/88 (43%), Positives = 55/88 (62%), Gaps = 2/88 (2%)
Frame = +2
Query: 32 MQLHIRGQSTHVLDVNGQESIGDIKNRLRLLADVESEEVTLSMCGAPLEDSCLVSEL--S 205
MQ+ ++G + H ++V+ + + +K+ L L + E+ LS G PLED LV E+
Sbjct: 1 MQVFVQGGALHAINVSEETTFNQLKSELVLSEGITVEDQVLSYGGVPLEDDTLVCEIVPE 60
Query: 206 STELDLTVPLLGGKVHGSLARAGKVKGQ 289
L L V ++GGKVHGSLARAGKV+GQ
Sbjct: 61 LATLSLAVRVVGGKVHGSLARAGKVRGQ 88
>UniRef50_UPI0000F33F66 Cluster: UPI0000F33F66 related cluster; n=3;
Laurasiatheria|Rep: UPI0000F33F66 UniRef100 entry - Bos
Taurus
Length = 128
Score = 62.5 bits (145), Expect = 2e-09
Identities = 38/88 (43%), Positives = 50/88 (56%), Gaps = 5/88 (5%)
Frame = +2
Query: 41 HIRGQSTHVLDVNGQESIGDIKNRLRLLADVESEEVTLSMCGAPLEDS-----CLVSELS 205
H + Q H L V GQE + IK + A +E ++ L + G PLED C V LS
Sbjct: 4 HAQSQELHTLKVTGQEMVAQIKAHV---ASLEGKDQVLLLAGTPLEDEVTLGQCEVEALS 60
Query: 206 STELDLTVPLLGGKVHGSLARAGKVKGQ 289
+ L++ +LGGKVHGSL AGKV+GQ
Sbjct: 61 T--LEVVGRMLGGKVHGSLDCAGKVRGQ 86
>UniRef50_Q18231 Cluster: Ribosomal protein, small subunit protein
30; n=3; Caenorhabditis|Rep: Ribosomal protein, small
subunit protein 30 - Caenorhabditis elegans
Length = 130
Score = 48.4 bits (110), Expect = 3e-05
Identities = 34/91 (37%), Positives = 48/91 (52%), Gaps = 5/91 (5%)
Frame = +2
Query: 32 MQLHIRG--QSTHVLDVNGQESIGDIKNRLRLLADVESEEVTLSMCGAPLEDSCLVSEL- 202
MQ+ + G +TH LDV+ ++ IK + EE ++S L + + E
Sbjct: 1 MQIFLLGLDNTTHTLDVDASTTLSAIKGVIGA-----GEEFSISYGSKVLSEELTLGECQ 55
Query: 203 --SSTELDLTVPLLGGKVHGSLARAGKVKGQ 289
S + L + LLGGKVHGSLARAGKV+ Q
Sbjct: 56 IESLSTLSVNGRLLGGKVHGSLARAGKVRAQ 86
>UniRef50_UPI0000EB013B Cluster: UPI0000EB013B related cluster; n=1;
Canis lupus familiaris|Rep: UPI0000EB013B UniRef100
entry - Canis familiaris
Length = 109
Score = 40.3 bits (90), Expect = 0.008
Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 7/91 (7%)
Frame = +2
Query: 32 MQLHIRGQSTHVLDVNGQESIGDIKNRLRLLADVESEEVTLSMCGAPLED-----SCLVS 196
MQL + Q H L+V GQE++ IK + L + E+ + + G L D C
Sbjct: 1 MQLFVWTQELHTLEVTGQETVTQIKTYVASLESIAPEDQVMLLAGMTLMDGATLGQCGAE 60
Query: 197 ELSSTELDLTV--PLLGGKVHGSLARAGKVK 283
LS+ E+ +LGG+ H LA GK +
Sbjct: 61 ALSTLEVACCTFGDMLGGEEH--LACVGKAR 89
>UniRef50_UPI00005A3817 Cluster: PREDICTED: similar to
UBIQUITIN-LIKE PROTEIN FUBI; n=1; Canis lupus
familiaris|Rep: PREDICTED: similar to UBIQUITIN-LIKE
PROTEIN FUBI - Canis familiaris
Length = 166
Score = 39.1 bits (87), Expect = 0.019
Identities = 22/87 (25%), Positives = 42/87 (48%), Gaps = 3/87 (3%)
Frame = +2
Query: 32 MQLHIRGQSTHVLDVNGQESIGDIKNRLRLLADVESEEVTLSMCGAPLEDSCLVSEL--- 202
+QL +R H L+V G E+ IK + L +E+ + + G+PL ++ +
Sbjct: 17 VQLLVRAWELHTLEVTGLEAFAHIKTHVASLEGHTTEDKVVLLAGSPLPGEAILGQCGVE 76
Query: 203 SSTELDLTVPLLGGKVHGSLARAGKVK 283
+ L++ +LGG G+ R G ++
Sbjct: 77 ALATLEMVGRMLGGSGGGARMRTGALR 103
>UniRef50_Q5D8K9 Cluster: SJCHGC02785 protein; n=1; Schistosoma
japonicum|Rep: SJCHGC02785 protein - Schistosoma
japonicum (Blood fluke)
Length = 153
Score = 35.5 bits (78), Expect = 0.23
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Frame = +2
Query: 23 RYKMQLHIRGQSTHVLDVNGQESIGDIKNRLRLLADVESEEVTLSMCGAPLEDSCLVSEL 202
R ++ H+ G V+ ES+ +K+++ + + + +L G PL DS L+ EL
Sbjct: 2 RLLVRSHLGGSI--VVSAGPNESVKSLKDKISVATGIHASTQSLYHHGLPLLDSSLLEEL 59
Query: 203 SSTEL---DLTVPLLGG 244
T+L D+ LLGG
Sbjct: 60 DFTDLDNVDVNCELLGG 76
>UniRef50_P49689 Cluster: 40S ribosomal protein S30; n=4;
Magnoliophyta|Rep: 40S ribosomal protein S30 -
Arabidopsis thaliana (Mouse-ear cress)
Length = 62
Score = 35.5 bits (78), Expect = 0.23
Identities = 15/16 (93%), Positives = 16/16 (100%)
Frame = +2
Query: 242 GKVHGSLARAGKVKGQ 289
GKVHGSLARAGKV+GQ
Sbjct: 2 GKVHGSLARAGKVRGQ 17
>UniRef50_O42952 Cluster: 40S ribosomal protein S30; n=37;
Eukaryota|Rep: 40S ribosomal protein S30 -
Schizosaccharomyces pombe (Fission yeast)
Length = 61
Score = 34.3 bits (75), Expect = 0.53
Identities = 15/16 (93%), Positives = 15/16 (93%)
Frame = +2
Query: 242 GKVHGSLARAGKVKGQ 289
GKVHGSLARAGKVK Q
Sbjct: 2 GKVHGSLARAGKVKSQ 17
>UniRef50_UPI0000EB4B7C Cluster: UPI0000EB4B7C related cluster; n=1;
Canis lupus familiaris|Rep: UPI0000EB4B7C UniRef100
entry - Canis familiaris
Length = 104
Score = 33.9 bits (74), Expect = 0.70
Identities = 21/76 (27%), Positives = 32/76 (42%)
Frame = +2
Query: 62 HVLDVNGQESIGDIKNRLRLLADVESEEVTLSMCGAPLEDSCLVSELSSTELDLTVPLLG 241
H L V GQE + +K + L + E+ + + G PLED + + V
Sbjct: 3 HTLKVTGQEMVAQMKAHVASLEGIAPEDQVVLLAGIPLEDEATLGQCG-------VEAPH 55
Query: 242 GKVHGSLARAGKVKGQ 289
GKV G + K + Q
Sbjct: 56 GKVRGQAPKVAKQEKQ 71
>UniRef50_Q4Q7P0 Cluster: 40S ribosomal protein S30, putative; n=4;
Leishmania|Rep: 40S ribosomal protein S30, putative -
Leishmania major
Length = 66
Score = 33.9 bits (74), Expect = 0.70
Identities = 14/16 (87%), Positives = 15/16 (93%)
Frame = +2
Query: 242 GKVHGSLARAGKVKGQ 289
GK+HGSLARAGKVK Q
Sbjct: 2 GKIHGSLARAGKVKNQ 17
>UniRef50_Q22X50 Cluster: Ubiquitin family protein; n=2; Tetrahymena
thermophila SB210|Rep: Ubiquitin family protein -
Tetrahymena thermophila SB210
Length = 745
Score = 33.9 bits (74), Expect = 0.70
Identities = 16/39 (41%), Positives = 23/39 (58%)
Frame = +2
Query: 68 LDVNGQESIGDIKNRLRLLADVESEEVTLSMCGAPLEDS 184
L +G +I IK +L L++VE E + L CG LED+
Sbjct: 294 LGADGNNTIDQIKQKLSSLSEVECEFMKLIFCGRQLEDN 332
>UniRef50_A0CBZ8 Cluster: Chromosome undetermined scaffold_166,
whole genome shotgun sequence; n=1; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_166,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 351
Score = 33.5 bits (73), Expect = 0.92
Identities = 17/60 (28%), Positives = 30/60 (50%)
Frame = +2
Query: 68 LDVNGQESIGDIKNRLRLLADVESEEVTLSMCGAPLEDSCLVSELSSTELDLTVPLLGGK 247
LDV G ++I D+K ++ + E + L G L+D ++EL E + V ++ K
Sbjct: 15 LDVEGSDTISDVKEKIFQVKQFEVGQQKLLRKGTLLDDKTTIAELGIQENEFLVVMVNAK 74
>UniRef50_A6NDN8 Cluster: Uncharacterized protein ENSP00000310146;
n=4; Euteleostomi|Rep: Uncharacterized protein
ENSP00000310146 - Homo sapiens (Human)
Length = 74
Score = 33.5 bits (73), Expect = 0.92
Identities = 16/72 (22%), Positives = 37/72 (51%)
Frame = +2
Query: 41 HIRGQSTHVLDVNGQESIGDIKNRLRLLADVESEEVTLSMCGAPLEDSCLVSELSSTELD 220
++R + H L+V G E++ K + L + E+ + + G+PL++ + + E
Sbjct: 4 YVRARELHTLEVTGLETVAQSKAHVASLEGLIPEDKVVLLAGSPLQNEATLGQ-CGVEAL 62
Query: 221 LTVPLLGGKVHG 256
T+ ++G ++ G
Sbjct: 63 TTLEVVGRRLGG 74
>UniRef50_Q54MD2 Cluster: Putative uncharacterized protein; n=3;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 312
Score = 33.1 bits (72), Expect = 1.2
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Frame = +2
Query: 68 LDVNGQESIGDIKNRLRLLADVESEEVTLSMCGAPLEDSCLVSELSST---ELDLTVPLL 238
L V E + +IK ++R D+ TL CG LED L+S+ + T + + + L
Sbjct: 80 LQVKESELVKNIKGKIRYKIDLPVRFQTLYYCGKKLEDDHLISDYNITYGSTIHMEIGLK 139
Query: 239 GG 244
GG
Sbjct: 140 GG 141
>UniRef50_Q9W6Y0 Cluster: 40S ribosomal protein S30; n=30;
Eukaryota|Rep: 40S ribosomal protein S30 - Oryzias
latipes (Medaka fish) (Japanese ricefish)
Length = 59
Score = 33.1 bits (72), Expect = 1.2
Identities = 14/15 (93%), Positives = 15/15 (100%)
Frame = +2
Query: 245 KVHGSLARAGKVKGQ 289
KVHGSLARAGKV+GQ
Sbjct: 1 KVHGSLARAGKVRGQ 15
>UniRef50_P62861 Cluster: 40S ribosomal protein S30; n=74; root|Rep:
40S ribosomal protein S30 - Homo sapiens (Human)
Length = 59
Score = 33.1 bits (72), Expect = 1.2
Identities = 14/15 (93%), Positives = 15/15 (100%)
Frame = +2
Query: 245 KVHGSLARAGKVKGQ 289
KVHGSLARAGKV+GQ
Sbjct: 1 KVHGSLARAGKVRGQ 15
>UniRef50_Q9C8Z4 Cluster: Uncharacterized protein At3g06530; n=3;
Arabidopsis thaliana|Rep: Uncharacterized protein
At3g06530 - Arabidopsis thaliana (Mouse-ear cress)
Length = 1830
Score = 32.7 bits (71), Expect = 1.6
Identities = 17/56 (30%), Positives = 31/56 (55%)
Frame = -1
Query: 172 GRTAHRQSHLLTLNISKKPEAILDITDGFLTIHVKDVRRLTSNVKLHFVSSYQESL 5
GR A + LL L++ EA++D GFL H+ D+ ++ + +VS + ++L
Sbjct: 1413 GRNATAEEQLLMLSVLVTLEAVIDKLGGFLNPHLGDIMKIMV-LHPEYVSDFDKNL 1467
>UniRef50_A1DL63 Cluster: Ribosomal S30/ubiquitin fusion; n=2;
Trichocomaceae|Rep: Ribosomal S30/ubiquitin fusion -
Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / NRRL
181)(Aspergillus fischerianus (strain ATCC 1020 / DSM
3700 / NRRL 181))
Length = 78
Score = 32.3 bits (70), Expect = 2.1
Identities = 14/14 (100%), Positives = 14/14 (100%)
Frame = +2
Query: 242 GKVHGSLARAGKVK 283
GKVHGSLARAGKVK
Sbjct: 2 GKVHGSLARAGKVK 15
>UniRef50_UPI0000E25D9C Cluster: PREDICTED: similar to putative DYT3
protein; n=8; Pan troglodytes|Rep: PREDICTED: similar to
putative DYT3 protein - Pan troglodytes
Length = 400
Score = 31.5 bits (68), Expect = 3.7
Identities = 16/32 (50%), Positives = 19/32 (59%)
Frame = -2
Query: 252 CTLPPRRGTVRSSSVDESSDTRHESSRGAPHI 157
C+ PPRRG R+ + S RH RGAPHI
Sbjct: 61 CSSPPRRGRGRAEVLLTSQAGRH--GRGAPHI 90
>UniRef50_Q3LW43 Cluster: Ribosomal protein S30; n=1; Bigelowiella
natans|Rep: Ribosomal protein S30 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 55
Score = 31.5 bits (68), Expect = 3.7
Identities = 13/16 (81%), Positives = 14/16 (87%)
Frame = +2
Query: 242 GKVHGSLARAGKVKGQ 289
GKVHGSL RAGKV+ Q
Sbjct: 2 GKVHGSLTRAGKVRNQ 17
>UniRef50_Q7QSI8 Cluster: GLP_195_35027_25878; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_195_35027_25878 - Giardia lamblia
ATCC 50803
Length = 3049
Score = 31.5 bits (68), Expect = 3.7
Identities = 17/48 (35%), Positives = 27/48 (56%)
Frame = -1
Query: 157 RQSHLLTLNISKKPEAILDITDGFLTIHVKDVRRLTSNVKLHFVSSYQ 14
+Q LT +I E +LD+ F T++ K V +LTS++K + S Q
Sbjct: 2756 KQLEFLTTSIKLSSETVLDLKIAFQTLNDKLVDQLTSDIKSDLLVSGQ 2803
>UniRef50_A4RDH0 Cluster: Putative uncharacterized protein; n=1;
Magnaporthe grisea|Rep: Putative uncharacterized protein
- Magnaporthe grisea (Rice blast fungus) (Pyricularia
grisea)
Length = 570
Score = 31.1 bits (67), Expect = 4.9
Identities = 16/35 (45%), Positives = 25/35 (71%), Gaps = 1/35 (2%)
Frame = +2
Query: 50 GQSTHVLDVNGQESIGDIKNRL-RLLADVESEEVT 151
G S+ ++ V G S+GDI++RL RL+ + E+EE T
Sbjct: 74 GSSSELIRVLGGPSVGDIRSRLVRLIPNQENEENT 108
>UniRef50_Q4RJR5 Cluster: Chromosome 13 SCAF15035, whole genome
shotgun sequence; n=11; Euteleostomi|Rep: Chromosome 13
SCAF15035, whole genome shotgun sequence - Tetraodon
nigroviridis (Green puffer)
Length = 592
Score = 30.7 bits (66), Expect = 6.5
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +2
Query: 125 ADVESEEVTLSMCGAPLEDSCLVSELSSTELDLT 226
+D+E E CG P+ + ++S +S TELDLT
Sbjct: 508 SDIEGELEAAFACGGPVVSN-MISSISETELDLT 540
>UniRef50_A5TTR4 Cluster: Putative uncharacterized protein; n=3;
Fusobacterium nucleatum|Rep: Putative uncharacterized
protein - Fusobacterium nucleatum subsp. polymorphum
ATCC 10953
Length = 72
Score = 30.7 bits (66), Expect = 6.5
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = -1
Query: 169 RTAHRQSHLLTLNISKKPEAILDITDGFLTIHVKDVRRLTSNVK 38
+ A ++ H+ T+N K ILD+ DGF+ I + + N++
Sbjct: 7 KLAWKKCHIATVNHKFKDATILDVADGFVLIETDEGEKALINLQ 50
>UniRef50_A6GRM2 Cluster: Putative uncharacterized protein; n=1;
Limnobacter sp. MED105|Rep: Putative uncharacterized
protein - Limnobacter sp. MED105
Length = 440
Score = 30.3 bits (65), Expect = 8.6
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Frame = +2
Query: 83 QESIGDIKNRLRLLADVESEEVTLSMCGAPLEDSCLVSELSSTELDLTVPLLGGKVH-GS 259
QES D+K+R+RLL + E E+ ++ A E S E + + D+ + GG++ G
Sbjct: 13 QESAADLKDRIRLL-EAELEQTKRALAKAEAEKSTANVE-AQPDTDMAFNVAGGRLKVGG 70
Query: 260 LARAGKVKG 286
R G
Sbjct: 71 AVRVNYTAG 79
>UniRef50_A6CNP8 Cluster: Thermophilic serine proteinase; n=1;
Bacillus sp. SG-1|Rep: Thermophilic serine proteinase -
Bacillus sp. SG-1
Length = 412
Score = 30.3 bits (65), Expect = 8.6
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +2
Query: 56 STHVLDVNGQESIGDIKNRLRLLADVESEEVTLSM 160
+ VLD NG S+ DI + ++ AD +E + LS+
Sbjct: 233 AVRVLDANGSGSLADIADGIQYAADTGAEVINLSL 267
>UniRef50_A1G407 Cluster: Peptidase S8 and S53, subtilisin, kexin,
sedolisin; n=1; Salinispora arenicola CNS205|Rep:
Peptidase S8 and S53, subtilisin, kexin, sedolisin -
Salinispora arenicola CNS205
Length = 421
Score = 30.3 bits (65), Expect = 8.6
Identities = 20/47 (42%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Frame = -3
Query: 242 HQEEAL*GRAQLMKALTQDMSPQGAHRT-*TESPP-HSQHQQEAGGD 108
H E+ G L+ ALT D+ P R+ T++PP S Q EAGGD
Sbjct: 329 HDEQYGHGVVDLVAALTADVPPLATPRSPTTDAPPVRSWVQPEAGGD 375
>UniRef50_Q5Z960 Cluster: Putative uncharacterized protein
P0659D09.8; n=1; Oryza sativa (japonica
cultivar-group)|Rep: Putative uncharacterized protein
P0659D09.8 - Oryza sativa subsp. japonica (Rice)
Length = 141
Score = 30.3 bits (65), Expect = 8.6
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = -2
Query: 288 WPLTLPARARDPCTLPPRRGTVRSSSVDESSDTRHESSRGAPH 160
W +PA T PP RGT +S S++ RH++ PH
Sbjct: 44 WFPPVPASCARSTTAPPPRGTAVAS--HNSAELRHDAGHARPH 84
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 272,927,677
Number of Sequences: 1657284
Number of extensions: 4532342
Number of successful extensions: 14321
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 14047
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14315
length of database: 575,637,011
effective HSP length: 73
effective length of database: 454,655,279
effective search space used: 10002416138
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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