Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_A20
(289 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC19G7.03c |rps3002|rps30-2, rps30|40S ribosomal protein S30|S... 34 0.004
SPAC19B12.04 |rps3001|rps30-1|40S ribosomal protein S30|Schizosa... 34 0.004
SPAC17D4.04 ||SPAC458.01|tRNA |Schizosaccharomyces pombe|chr 1||... 29 0.18
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo... 26 0.95
SPBC365.09c |||human KIN homolog|Schizosaccharomyces pombe|chr 2... 26 0.95
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom... 26 1.2
SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual 26 1.2
SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual 25 2.2
SPAC140.03 |arb1||argonaute binding protein 1|Schizosaccharomyce... 25 2.9
SPAC23E2.03c |ste7||meiotic suppressor protein Ste7|Schizosaccha... 24 3.8
SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces po... 24 5.0
SPCC1682.03c |mug174||meiotically upregulated gene Mug174|Schizo... 24 5.0
SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit Ssr1|Schizosa... 23 6.7
SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8 |Schizosacch... 23 6.7
SPBC1289.06c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 23 6.7
SPCC1919.11 |mug137||BAR adaptor protein|Schizosaccharomyces pom... 23 6.7
SPAC1B3.01c |||uracil phosphoribosyltransferase |Schizosaccharom... 23 8.8
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos... 23 8.8
SPAC3F10.09 |||1-|Schizosaccharomyces pombe|chr 1|||Manual 23 8.8
>SPBC19G7.03c |rps3002|rps30-2, rps30|40S ribosomal protein
S30|Schizosaccharomyces pombe|chr 2|||Manual
Length = 61
Score = 34.3 bits (75), Expect = 0.004
Identities = 15/16 (93%), Positives = 15/16 (93%)
Frame = +2
Query: 242 GKVHGSLARAGKVKGQ 289
GKVHGSLARAGKVK Q
Sbjct: 2 GKVHGSLARAGKVKSQ 17
>SPAC19B12.04 |rps3001|rps30-1|40S ribosomal protein
S30|Schizosaccharomyces pombe|chr 1|||Manual
Length = 61
Score = 34.3 bits (75), Expect = 0.004
Identities = 15/16 (93%), Positives = 15/16 (93%)
Frame = +2
Query: 242 GKVHGSLARAGKVKGQ 289
GKVHGSLARAGKVK Q
Sbjct: 2 GKVHGSLARAGKVKSQ 17
>SPAC17D4.04 ||SPAC458.01|tRNA |Schizosaccharomyces pombe|chr
1|||Manual
Length = 654
Score = 28.7 bits (61), Expect = 0.18
Identities = 16/38 (42%), Positives = 20/38 (52%)
Frame = +2
Query: 59 THVLDVNGQESIGDIKNRLRLLADVESEEVTLSMCGAP 172
T D+N QES+ + LL +VES L MC AP
Sbjct: 120 TEAGDINRQESVSMVPP---LLLNVESHHKVLDMCAAP 154
>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1811
Score = 26.2 bits (55), Expect = 0.95
Identities = 14/37 (37%), Positives = 16/37 (43%)
Frame = -2
Query: 282 LTLPARARDPCTLPPRRGTVRSSSVDESSDTRHESSR 172
+TLP RDP P V E+S HE SR
Sbjct: 1562 MTLPIELRDPSLYPQVNSDSSLEDVKENSFRPHEISR 1598
>SPBC365.09c |||human KIN homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 304
Score = 26.2 bits (55), Expect = 0.95
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = -1
Query: 157 RQSHLLTLNISKKPEAILDITDGFLTIHVKDVRRLTSNVKLHFVSSYQE 11
RQ +++ +N K+ I D ++ FL + +R K+HF YQE
Sbjct: 52 RQMNVIAMNPGKR---IQDFSNQFLRDFISLLRTAHGEKKIHFNQFYQE 97
>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1692
Score = 25.8 bits (54), Expect = 1.2
Identities = 13/41 (31%), Positives = 24/41 (58%), Gaps = 4/41 (9%)
Frame = -1
Query: 151 SHLLTLNISKK----PEAILDITDGFLTIHVKDVRRLTSNV 41
+++ T+NIS+K + LDI + ++V+D R +NV
Sbjct: 1102 NYVTTMNISEKGYSMDSSCLDIGVSIILVYVRDTRAFVANV 1142
>SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 25.8 bits (54), Expect = 1.2
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = +2
Query: 122 LADVESEEVTLSMCGAPLEDSCLVSELSSTELDLTVPLLGG 244
++D +EE++ ++ GAP+ +S S L T P + G
Sbjct: 119 VSDTNNEEISKNIYGAPILESTSSDFQSKDSLSTTQPSVSG 159
>SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
Length = 674
Score = 25.0 bits (52), Expect = 2.2
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +2
Query: 71 DVNGQESIGDIKNRLRLLADVESEEVTLSMCGAP 172
++N QE++ + L DVE V L MC AP
Sbjct: 140 NINRQEAVSMLPP---LFLDVEPHHVILDMCAAP 170
>SPAC140.03 |arb1||argonaute binding protein 1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 399
Score = 24.6 bits (51), Expect = 2.9
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +2
Query: 173 LEDSCLVSELSSTELDLTVPLLGGKVHGSLARA 271
+ D+CL++E + TEL ++ L K+ G L RA
Sbjct: 199 IRDACLLAEQAETEL-ISNKRLSTKLPGRLQRA 230
>SPAC23E2.03c |ste7||meiotic suppressor protein
Ste7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 569
Score = 24.2 bits (50), Expect = 3.8
Identities = 11/41 (26%), Positives = 17/41 (41%)
Frame = -2
Query: 285 PLTLPARARDPCTLPPRRGTVRSSSVDESSDTRHESSRGAP 163
PL++ +R C P S+ D S+ + S G P
Sbjct: 302 PLSISSRPSPCCPSTPSSAVTLSNGFDSQSNAYNNSGTGPP 342
>SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1010
Score = 23.8 bits (49), Expect = 5.0
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = -2
Query: 237 RRGTVRSSSVDESSDTRHESSRGAPHID 154
RRG S+ D S D RH +R + D
Sbjct: 919 RRGLEGKSNHDHSKDRRHSRARKPAYAD 946
>SPCC1682.03c |mug174||meiotically upregulated gene
Mug174|Schizosaccharomyces pombe|chr 3|||Manual
Length = 626
Score = 23.8 bits (49), Expect = 5.0
Identities = 12/18 (66%), Positives = 13/18 (72%)
Frame = -2
Query: 228 TVRSSSVDESSDTRHESS 175
T SSS DESSDT +SS
Sbjct: 285 TSDSSSGDESSDTARQSS 302
>SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit
Ssr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 23.4 bits (48), Expect = 6.7
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +2
Query: 134 ESEEVTLSMCGAPLEDSCLVSELSST 211
ESE + M G LEDS +SEL T
Sbjct: 402 ESESYDVEMNGKSLEDSDSLSELYLT 427
>SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 269
Score = 23.4 bits (48), Expect = 6.7
Identities = 11/38 (28%), Positives = 19/38 (50%)
Frame = +2
Query: 140 EEVTLSMCGAPLEDSCLVSELSSTELDLTVPLLGGKVH 253
E ++ + CG + C++S L +T P+ KVH
Sbjct: 214 ENLSCTPCGHIFCNFCILSALGTTAATQKCPVCRRKVH 251
>SPBC1289.06c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 481
Score = 23.4 bits (48), Expect = 6.7
Identities = 9/25 (36%), Positives = 17/25 (68%)
Frame = -1
Query: 115 EAILDITDGFLTIHVKDVRRLTSNV 41
+ +L I D +L++ KD+ RLT+ +
Sbjct: 304 DPLLTIFDYYLSVSPKDITRLTNAI 328
>SPCC1919.11 |mug137||BAR adaptor protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 420
Score = 23.4 bits (48), Expect = 6.7
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +2
Query: 83 QESIGDIKNRLRLLADVESEE 145
+ES +KNR+ L DVE+++
Sbjct: 174 EESTEQVKNRMIALKDVEADQ 194
>SPAC1B3.01c |||uracil phosphoribosyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 219
Score = 23.0 bits (47), Expect = 8.8
Identities = 8/29 (27%), Positives = 16/29 (55%)
Frame = -1
Query: 157 RQSHLLTLNISKKPEAILDITDGFLTIHV 71
+Q ++ LN+ PE + ++ D F I +
Sbjct: 160 KQEQIIFLNVIASPEGLKNVHDRFPNIRI 188
>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
Length = 953
Score = 23.0 bits (47), Expect = 8.8
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = -1
Query: 166 TAHRQSHLLTLNISKKPEAILDITDGFL 83
+A++Q+ LL KPEA+LD+ + FL
Sbjct: 517 SANKQTDLL----QNKPEALLDLENRFL 540
>SPAC3F10.09 |||1-|Schizosaccharomyces pombe|chr 1|||Manual
Length = 264
Score = 23.0 bits (47), Expect = 8.8
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +2
Query: 164 GAPLEDSCLVSELSSTELDLTV 229
G +ED LV +LS ++DLT+
Sbjct: 213 GRSIEDLDLVDKLSKGKVDLTI 234
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,103,625
Number of Sequences: 5004
Number of extensions: 17513
Number of successful extensions: 59
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 67723590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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