Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_A20
(289 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_57861| Best HMM Match : Ribosomal_S30 (HMM E-Value=2e-32) 32 0.089
SB_22742| Best HMM Match : ubiquitin (HMM E-Value=0.01) 30 0.36
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 2.5
SB_37595| Best HMM Match : Ribosomal_S11 (HMM E-Value=0) 27 3.3
SB_14156| Best HMM Match : Neuromodulin (HMM E-Value=1) 27 3.3
SB_23379| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.3
SB_3559| Best HMM Match : Peptidase_M10_N (HMM E-Value=1.3) 27 3.3
SB_43972| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 4.4
SB_39229| Best HMM Match : Phage_holin_1 (HMM E-Value=3.5) 26 4.4
SB_23465| Best HMM Match : Pkinase_Tyr (HMM E-Value=3.1e-07) 26 4.4
SB_20539| Best HMM Match : VWA (HMM E-Value=5.1848e-44) 26 5.8
SB_430| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 5.8
SB_42709| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 7.7
SB_59483| Best HMM Match : DUF402 (HMM E-Value=3.8) 25 7.7
SB_40043| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 7.7
>SB_57861| Best HMM Match : Ribosomal_S30 (HMM E-Value=2e-32)
Length = 61
Score = 31.9 bits (69), Expect = 0.089
Identities = 14/15 (93%), Positives = 14/15 (93%)
Frame = +2
Query: 245 KVHGSLARAGKVKGQ 289
KVHGSLARAGKVK Q
Sbjct: 2 KVHGSLARAGKVKSQ 16
>SB_22742| Best HMM Match : ubiquitin (HMM E-Value=0.01)
Length = 792
Score = 29.9 bits (64), Expect = 0.36
Identities = 18/59 (30%), Positives = 28/59 (47%)
Frame = +2
Query: 23 RYKMQLHIRGQSTHVLDVNGQESIGDIKNRLRLLADVESEEVTLSMCGAPLEDSCLVSE 199
R M L RG ST +++ + S+ D+K L + E + L + LEDS + E
Sbjct: 182 RKTMLLQTRGGSTLEIEITERTSVEDLKAEAELRVGIPVELIRLQVNKVNLEDSEKICE 240
>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2670
Score = 27.1 bits (57), Expect = 2.5
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -2
Query: 261 RDPCTLPPRRGTVRSSSVDESSDTRHESSRGAPHI 157
R CT PP T SSS S+ T + S +P++
Sbjct: 971 RSSCTTPPSSDTTNSSSAGPSA-TNNASPSSSPYV 1004
>SB_37595| Best HMM Match : Ribosomal_S11 (HMM E-Value=0)
Length = 543
Score = 26.6 bits (56), Expect = 3.3
Identities = 15/61 (24%), Positives = 30/61 (49%)
Frame = +2
Query: 62 HVLDVNGQESIGDIKNRLRLLADVESEEVTLSMCGAPLEDSCLVSELSSTELDLTVPLLG 241
HV D++G+E+I + +++ AD + +M A + + E+ T L + + G
Sbjct: 214 HVTDLSGRETISRVTGGMKVKADRDEASPYAAMLAAQ-DVAARCKEIGITALHIKLRATG 272
Query: 242 G 244
G
Sbjct: 273 G 273
>SB_14156| Best HMM Match : Neuromodulin (HMM E-Value=1)
Length = 462
Score = 26.6 bits (56), Expect = 3.3
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = +2
Query: 161 CGAPLEDSCLVSELSSTELDLTV 229
CG PL+D C SE T TV
Sbjct: 30 CGVPLKDQCSKSETELTNASTTV 52
>SB_23379| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 970
Score = 26.6 bits (56), Expect = 3.3
Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 1/79 (1%)
Frame = +3
Query: 42 TLEVSRRTSLT*MVKNPSVISRIASGFXXXXXXXXXXXXXXXXXXXTHVLCQSFHQLSST 221
+L V R + +K PS+I+R+ S V+ Q FHQ T
Sbjct: 488 SLSVGRSSKGQDHLKKPSLIARVLS------VLKRFKSKRPSRSTSADVVRQKFHQAGQT 541
Query: 222 SQCLFL-VVKCTDPWLVLV 275
+CL V+ +DP L+L+
Sbjct: 542 KRCLSAPVLSESDPRLMLL 560
>SB_3559| Best HMM Match : Peptidase_M10_N (HMM E-Value=1.3)
Length = 861
Score = 26.6 bits (56), Expect = 3.3
Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 1/79 (1%)
Frame = +3
Query: 42 TLEVSRRTSLT*MVKNPSVISRIASGFXXXXXXXXXXXXXXXXXXXTHVLCQSFHQLSST 221
+L V R + +K PS+I+R+ S V+ Q FHQ T
Sbjct: 363 SLSVGRSSKGQDHLKKPSLIARVLS------VLKRFKSRRPSRSTSADVVRQKFHQAGQT 416
Query: 222 SQCLFL-VVKCTDPWLVLV 275
+CL V+ +DP L+L+
Sbjct: 417 KRCLSAPVLSESDPRLMLL 435
>SB_43972| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 899
Score = 26.2 bits (55), Expect = 4.4
Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
Frame = -2
Query: 285 PLTLPARARDPCTLPPRRGTVRSSSVDESSDTRHES---SRGAPH 160
P P + DP LPPRR S + R +S SR +PH
Sbjct: 795 PALPPRKHSDPPPLPPRRKKSHEDSPSPCTTPRRKSTELSRCSPH 839
>SB_39229| Best HMM Match : Phage_holin_1 (HMM E-Value=3.5)
Length = 636
Score = 26.2 bits (55), Expect = 4.4
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -2
Query: 279 TLPARARDPCTLPPRRGTVRSSSVDESSD 193
+LP R TLP R GT R + +D D
Sbjct: 145 SLPVEERRASTLPSRSGTPRLTKIDVVDD 173
>SB_23465| Best HMM Match : Pkinase_Tyr (HMM E-Value=3.1e-07)
Length = 1118
Score = 26.2 bits (55), Expect = 4.4
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = -2
Query: 276 LPARARDPCTLPPRRGTVRSSSVDESSDTRHESSRGAPH 160
L A++ DP LP V S S +++D ++ APH
Sbjct: 404 LKAQSEDPEVLPELEDQVSSDSRKDTTDRSQDTPCQAPH 442
>SB_20539| Best HMM Match : VWA (HMM E-Value=5.1848e-44)
Length = 262
Score = 25.8 bits (54), Expect = 5.8
Identities = 14/33 (42%), Positives = 15/33 (45%)
Frame = -2
Query: 285 PLTLPARARDPCTLPPRRGTVRSSSVDESSDTR 187
PLT P R P T PPR T R + TR
Sbjct: 218 PLTFPPRTFAPLTQPPRPVTRRRDVPPTPAPTR 250
>SB_430| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2202
Score = 25.8 bits (54), Expect = 5.8
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = -3
Query: 140 HSQHQQEAGGDS*YHRWILDH 78
H HQ DS +HR +LDH
Sbjct: 965 HHDHQSHQHHDSHHHREVLDH 985
>SB_42709| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1616
Score = 25.4 bits (53), Expect = 7.7
Identities = 15/54 (27%), Positives = 25/54 (46%)
Frame = +2
Query: 122 LADVESEEVTLSMCGAPLEDSCLVSELSSTELDLTVPLLGGKVHGSLARAGKVK 283
+ D++ E LS C + S L T+L + + LGG L +AG ++
Sbjct: 852 IEDIQQEITVLSQCDSLYVTKYHGSYLKGTKLWIIMEYLGGGSALDLMKAGNIE 905
>SB_59483| Best HMM Match : DUF402 (HMM E-Value=3.8)
Length = 796
Score = 25.4 bits (53), Expect = 7.7
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = -1
Query: 160 HRQSHLLTLNISKKPEAILDITDGFLTIHVKDVRRLTSN 44
HR S +++ N K P AIL D + ++ K RR++++
Sbjct: 584 HRISEIISQN-RKNPSAILGSRDWWASVDSKSQRRVSNS 621
>SB_40043| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 534
Score = 25.4 bits (53), Expect = 7.7
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = -1
Query: 160 HRQSHLLTLNISKKPEAILDITDGFLTIHVKDVRRLTSN 44
HR S +++ N K P AIL D + ++ K RR++++
Sbjct: 291 HRISEIISQN-RKNPSAILGSRDWWASVDSKSQRRVSNS 328
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,665,570
Number of Sequences: 59808
Number of extensions: 150390
Number of successful extensions: 378
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 352
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 378
length of database: 16,821,457
effective HSP length: 70
effective length of database: 12,634,897
effective search space used: 315872425
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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