Samia BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_A20
         (289 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY071683-1|AAL49305.2|  147|Drosophila melanogaster RH08962p pro...    83   4e-17
AE014297-2878|AAN13838.1|  132|Drosophila melanogaster CG15697-P...    83   7e-17
AE014297-2877|AAF55815.1|  132|Drosophila melanogaster CG15697-P...    83   7e-17
BT001630-1|AAN71385.1|  642|Drosophila melanogaster RE38276p pro...    28   1.7  
AY058503-1|AAL13732.1|  627|Drosophila melanogaster LD21207p pro...    28   1.7  
AE014297-4718|AAF57128.1|  641|Drosophila melanogaster CG18729-P...    28   1.7  
AE014297-2311|AAF55388.1|  642|Drosophila melanogaster CG5169-PA...    28   1.7  
AE014298-1754|AAG22345.2|  570|Drosophila melanogaster CG1924-PA...    27   5.1  
AE013599-3419|AAF46866.2|  775|Drosophila melanogaster CG33143-P...    26   6.8  
X03636-1|CAA27285.1| 1127|Drosophila melanogaster per protein pr...    26   9.0  
M30114-3|AAA28753.1| 1176|Drosophila melanogaster biological clo...    26   9.0  
M30114-2|AAA28752.1| 1122|Drosophila melanogaster biological clo...    26   9.0  
M30114-1|AAA28754.1| 1218|Drosophila melanogaster biological clo...    26   9.0  
AY102667-1|AAM27496.1|  128|Drosophila melanogaster GM01757p pro...    26   9.0  
AL024485-7|CAA19677.1| 1156|Drosophila melanogaster EG:155E2.4,F...    26   9.0  
AL024485-6|CAA19680.1| 1055|Drosophila melanogaster EG:155E2.4,F...    26   9.0  
AL024485-5|CAA19679.1| 1116|Drosophila melanogaster EG:155E2.4,F...    26   9.0  
AL024485-4|CAA19678.1| 1212|Drosophila melanogaster EG:155E2.4,F...    26   9.0  
AF033029-1|AAB87476.1| 1224|Drosophila melanogaster period clock...    26   9.0  
AE014298-440|AAF45804.1| 1218|Drosophila melanogaster CG2647-PA ...    26   9.0  
AE014296-1375|AAG22323.1|  128|Drosophila melanogaster CG18767-P...    26   9.0  

>AY071683-1|AAL49305.2|  147|Drosophila melanogaster RH08962p
           protein.
          Length = 147

 Score = 83.4 bits (197), Expect = 4e-17
 Identities = 46/93 (49%), Positives = 59/93 (63%), Gaps = 1/93 (1%)
 Frame = +2

Query: 14  LIRRYKMQLHIRGQST-HVLDVNGQESIGDIKNRLRLLADVESEEVTLSMCGAPLEDSCL 190
           L  R  MQL +RG  T   L+V+   +I  +KN+L  +    +EE +L   G  L +   
Sbjct: 10  LRERIIMQLFVRGLETIEALEVSQDATIAGVKNQLAQIHGFNAEEFSLDCEGITLANETP 69

Query: 191 VSELSSTELDLTVPLLGGKVHGSLARAGKVKGQ 289
           V+ LSS ELDL +P+LGGKVHGSLARAGKVKGQ
Sbjct: 70  VTALSSFELDLNIPMLGGKVHGSLARAGKVKGQ 102


>AE014297-2878|AAN13838.1|  132|Drosophila melanogaster CG15697-PB,
           isoform B protein.
          Length = 132

 Score = 82.6 bits (195), Expect = 7e-17
 Identities = 44/87 (50%), Positives = 57/87 (65%), Gaps = 1/87 (1%)
 Frame = +2

Query: 32  MQLHIRGQST-HVLDVNGQESIGDIKNRLRLLADVESEEVTLSMCGAPLEDSCLVSELSS 208
           MQL +RG  T   L+V+   +I  +KN+L  +    +EE +L   G  L +   V+ LSS
Sbjct: 1   MQLFVRGLETIEALEVSQDATIAGVKNQLAQIHGFNAEEFSLDCEGITLANETPVTALSS 60

Query: 209 TELDLTVPLLGGKVHGSLARAGKVKGQ 289
            ELDL +P+LGGKVHGSLARAGKVKGQ
Sbjct: 61  FELDLNIPMLGGKVHGSLARAGKVKGQ 87


>AE014297-2877|AAF55815.1|  132|Drosophila melanogaster CG15697-PA,
           isoform A protein.
          Length = 132

 Score = 82.6 bits (195), Expect = 7e-17
 Identities = 44/87 (50%), Positives = 57/87 (65%), Gaps = 1/87 (1%)
 Frame = +2

Query: 32  MQLHIRGQST-HVLDVNGQESIGDIKNRLRLLADVESEEVTLSMCGAPLEDSCLVSELSS 208
           MQL +RG  T   L+V+   +I  +KN+L  +    +EE +L   G  L +   V+ LSS
Sbjct: 1   MQLFVRGLETIEALEVSQDATIAGVKNQLAQIHGFNAEEFSLDCEGITLANETPVTALSS 60

Query: 209 TELDLTVPLLGGKVHGSLARAGKVKGQ 289
            ELDL +P+LGGKVHGSLARAGKVKGQ
Sbjct: 61  FELDLNIPMLGGKVHGSLARAGKVKGQ 87


>BT001630-1|AAN71385.1|  642|Drosophila melanogaster RE38276p
           protein.
          Length = 642

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = +2

Query: 128 DVESEEVTLSMCGAPLEDSCLVSELSSTELDLTVPLLGGKVHGSLARAG 274
           D++ E + LS C +P       S L  T+L + +  LGG     L +AG
Sbjct: 55  DIQQEIMVLSQCDSPYVTKYYGSFLKGTKLWIIMEYLGGGSALDLMKAG 103


>AY058503-1|AAL13732.1|  627|Drosophila melanogaster LD21207p
           protein.
          Length = 627

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +2

Query: 152 LSMCGAPLEDSCLVSELSSTELDL 223
           L + G+PL+D CLV  ++   +DL
Sbjct: 64  LDLTGSPLKDDCLVDAIADLSIDL 87


>AE014297-4718|AAF57128.1|  641|Drosophila melanogaster CG18729-PA
           protein.
          Length = 641

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +2

Query: 152 LSMCGAPLEDSCLVSELSSTELDL 223
           L + G+PL+D CLV  ++   +DL
Sbjct: 78  LDLTGSPLKDDCLVDAIADLSIDL 101


>AE014297-2311|AAF55388.1|  642|Drosophila melanogaster CG5169-PA
           protein.
          Length = 642

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = +2

Query: 128 DVESEEVTLSMCGAPLEDSCLVSELSSTELDLTVPLLGGKVHGSLARAG 274
           D++ E + LS C +P       S L  T+L + +  LGG     L +AG
Sbjct: 55  DIQQEIMVLSQCDSPYVTKYYGSFLKGTKLWIIMEYLGGGSALDLMKAG 103


>AE014298-1754|AAG22345.2|  570|Drosophila melanogaster CG1924-PA
           protein.
          Length = 570

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -2

Query: 288 WPLTLPARARDPCTLPPRR 232
           W LT+P R    C LPP++
Sbjct: 525 WKLTIPPRRAYSCPLPPKK 543


>AE013599-3419|AAF46866.2|  775|Drosophila melanogaster CG33143-PB,
           isoform B protein.
          Length = 775

 Score = 26.2 bits (55), Expect = 6.8
 Identities = 14/42 (33%), Positives = 18/42 (42%)
 Frame = -2

Query: 288 WPLTLPARARDPCTLPPRRGTVRSSSVDESSDTRHESSRGAP 163
           W L  PA  +    LP   G   S++V  +S   H  S G P
Sbjct: 235 WVLVGPALRKKKQCLPRCEGCASSAAVSAASSHGHGHSHGTP 276


>X03636-1|CAA27285.1| 1127|Drosophila melanogaster per protein
           protein.
          Length = 1127

 Score = 25.8 bits (54), Expect = 9.0
 Identities = 17/41 (41%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = -2

Query: 285 PLTLPARARDPCTLPPR-RGTVRSSSVDESSDTRHESSRGA 166
           P+T PA    P T PP  RGT  S +    S   HE S G+
Sbjct: 569 PVTAPAELDPPKTEPPEPRGTCVSGASGPMSPV-HEGSGGS 608


>M30114-3|AAA28753.1| 1176|Drosophila melanogaster biological clock
           protein C protein.
          Length = 1176

 Score = 25.8 bits (54), Expect = 9.0
 Identities = 17/41 (41%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = -2

Query: 285 PLTLPARARDPCTLPPR-RGTVRSSSVDESSDTRHESSRGA 166
           P+T PA    P T PP  RGT  S +    S   HE S G+
Sbjct: 631 PVTAPAELDPPKTEPPEPRGTCVSGASGPMSPV-HEGSGGS 670


>M30114-2|AAA28752.1| 1122|Drosophila melanogaster biological clock
           protein B protein.
          Length = 1122

 Score = 25.8 bits (54), Expect = 9.0
 Identities = 17/41 (41%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = -2

Query: 285 PLTLPARARDPCTLPPR-RGTVRSSSVDESSDTRHESSRGA 166
           P+T PA    P T PP  RGT  S +    S   HE S G+
Sbjct: 631 PVTAPAELDPPKTEPPEPRGTCVSGASGPMSPV-HEGSGGS 670


>M30114-1|AAA28754.1| 1218|Drosophila melanogaster biological clock
           protein A protein.
          Length = 1218

 Score = 25.8 bits (54), Expect = 9.0
 Identities = 17/41 (41%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = -2

Query: 285 PLTLPARARDPCTLPPR-RGTVRSSSVDESSDTRHESSRGA 166
           P+T PA    P T PP  RGT  S +    S   HE S G+
Sbjct: 631 PVTAPAELDPPKTEPPEPRGTCVSGASGPMSPV-HEGSGGS 670


>AY102667-1|AAM27496.1|  128|Drosophila melanogaster GM01757p
           protein.
          Length = 128

 Score = 25.8 bits (54), Expect = 9.0
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -3

Query: 146 PPHSQHQQEAGGDS*YHRWILDHSRQGR 63
           P H +H+Q +     Y  WIL H+ Q +
Sbjct: 97  PTHPRHKQMSMKKRDYKSWILTHATQSK 124


>AL024485-7|CAA19677.1| 1156|Drosophila melanogaster
           EG:155E2.4,FBgn0003068;per protein.
          Length = 1156

 Score = 25.8 bits (54), Expect = 9.0
 Identities = 17/41 (41%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = -2

Query: 285 PLTLPARARDPCTLPPR-RGTVRSSSVDESSDTRHESSRGA 166
           P+T PA    P T PP  RGT  S +    S   HE S G+
Sbjct: 569 PVTAPAELDPPKTEPPEPRGTCVSGASGPMSPV-HEGSGGS 608


>AL024485-6|CAA19680.1| 1055|Drosophila melanogaster
           EG:155E2.4,FBgn0003068;per protein.
          Length = 1055

 Score = 25.8 bits (54), Expect = 9.0
 Identities = 17/41 (41%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = -2

Query: 285 PLTLPARARDPCTLPPR-RGTVRSSSVDESSDTRHESSRGA 166
           P+T PA    P T PP  RGT  S +    S   HE S G+
Sbjct: 631 PVTAPAELDPPKTEPPEPRGTCVSGASGPMSPV-HEGSGGS 670


>AL024485-5|CAA19679.1| 1116|Drosophila melanogaster
           EG:155E2.4,FBgn0003068;per protein.
          Length = 1116

 Score = 25.8 bits (54), Expect = 9.0
 Identities = 17/41 (41%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = -2

Query: 285 PLTLPARARDPCTLPPR-RGTVRSSSVDESSDTRHESSRGA 166
           P+T PA    P T PP  RGT  S +    S   HE S G+
Sbjct: 631 PVTAPAELDPPKTEPPEPRGTCVSGASGPMSPV-HEGSGGS 670


>AL024485-4|CAA19678.1| 1212|Drosophila melanogaster
           EG:155E2.4,FBgn0003068;per protein.
          Length = 1212

 Score = 25.8 bits (54), Expect = 9.0
 Identities = 17/41 (41%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = -2

Query: 285 PLTLPARARDPCTLPPR-RGTVRSSSVDESSDTRHESSRGA 166
           P+T PA    P T PP  RGT  S +    S   HE S G+
Sbjct: 631 PVTAPAELDPPKTEPPEPRGTCVSGASGPMSPV-HEGSGGS 670


>AF033029-1|AAB87476.1| 1224|Drosophila melanogaster period clock
           protein protein.
          Length = 1224

 Score = 25.8 bits (54), Expect = 9.0
 Identities = 17/41 (41%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = -2

Query: 285 PLTLPARARDPCTLPPR-RGTVRSSSVDESSDTRHESSRGA 166
           P+T PA    P T PP  RGT  S +    S   HE S G+
Sbjct: 631 PVTAPAELDPPKTEPPEPRGTCVSGASGPMSPV-HEGSGGS 670


>AE014298-440|AAF45804.1| 1218|Drosophila melanogaster CG2647-PA
           protein.
          Length = 1218

 Score = 25.8 bits (54), Expect = 9.0
 Identities = 17/41 (41%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = -2

Query: 285 PLTLPARARDPCTLPPR-RGTVRSSSVDESSDTRHESSRGA 166
           P+T PA    P T PP  RGT  S +    S   HE S G+
Sbjct: 631 PVTAPAELDPPKTEPPEPRGTCVSGASGPMSPV-HEGSGGS 670


>AE014296-1375|AAG22323.1|  128|Drosophila melanogaster CG18767-PA
           protein.
          Length = 128

 Score = 25.8 bits (54), Expect = 9.0
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -3

Query: 146 PPHSQHQQEAGGDS*YHRWILDHSRQGR 63
           P H +H+Q +     Y  WIL H+ Q +
Sbjct: 97  PTHPRHKQMSMKKRDYKSWILTHATQSK 124


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,753,892
Number of Sequences: 53049
Number of extensions: 232727
Number of successful extensions: 824
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 804
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 824
length of database: 24,988,368
effective HSP length: 72
effective length of database: 21,168,840
effective search space used: 486883320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)