Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_A20
(289 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U53148-5|AAB37076.1| 130|Caenorhabditis elegans Ribosomal prote... 48 8e-07
U80452-4|AAB37860.1| 226|Caenorhabditis elegans Hypothetical pr... 30 0.31
U28741-7|AAO38645.1| 721|Caenorhabditis elegans Synapse defecti... 29 0.40
U28741-6|AAO21428.1| 942|Caenorhabditis elegans Synapse defecti... 29 0.40
U28741-5|AAO38644.1| 987|Caenorhabditis elegans Synapse defecti... 29 0.40
AF546880-1|AAN38752.1| 942|Caenorhabditis elegans axon identity... 29 0.40
AF000194-3|AAK39379.1| 191|Caenorhabditis elegans Hypothetical ... 27 2.9
Z81518-1|CAB04214.3| 601|Caenorhabditis elegans Hypothetical pr... 23 4.4
AF039044-13|AAG24128.2| 435|Caenorhabditis elegans Hypothetical... 26 5.0
AF038618-2|AAB92072.1| 487|Caenorhabditis elegans Hypothetical ... 26 5.0
U23168-5|ABD63247.1| 2702|Caenorhabditis elegans Temporarily ass... 25 6.6
U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily ass... 25 6.6
AF039038-6|AAK21431.2| 629|Caenorhabditis elegans Hypothetical ... 25 6.6
AC024848-4|AAK68543.2| 1020|Caenorhabditis elegans Hypothetical ... 25 8.7
AC006684-8|AAF39963.2| 132|Caenorhabditis elegans Hypothetical ... 25 8.7
>U53148-5|AAB37076.1| 130|Caenorhabditis elegans Ribosomal protein,
small subunitprotein 30 protein.
Length = 130
Score = 48.4 bits (110), Expect = 8e-07
Identities = 34/91 (37%), Positives = 48/91 (52%), Gaps = 5/91 (5%)
Frame = +2
Query: 32 MQLHIRG--QSTHVLDVNGQESIGDIKNRLRLLADVESEEVTLSMCGAPLEDSCLVSEL- 202
MQ+ + G +TH LDV+ ++ IK + EE ++S L + + E
Sbjct: 1 MQIFLLGLDNTTHTLDVDASTTLSAIKGVIGA-----GEEFSISYGSKVLSEELTLGECQ 55
Query: 203 --SSTELDLTVPLLGGKVHGSLARAGKVKGQ 289
S + L + LLGGKVHGSLARAGKV+ Q
Sbjct: 56 IESLSTLSVNGRLLGGKVHGSLARAGKVRAQ 86
>U80452-4|AAB37860.1| 226|Caenorhabditis elegans Hypothetical
protein C16C8.4 protein.
Length = 226
Score = 29.9 bits (64), Expect = 0.31
Identities = 12/47 (25%), Positives = 24/47 (51%)
Frame = +2
Query: 59 THVLDVNGQESIGDIKNRLRLLADVESEEVTLSMCGAPLEDSCLVSE 199
++ ++ ++++ DIKN + D+ LS G LED C + +
Sbjct: 164 SYAFKIHREDTVFDIKNDIEHRHDIPQHSYWLSFSGKRLEDHCSIGD 210
>U28741-7|AAO38645.1| 721|Caenorhabditis elegans Synapse defective
protein 1, isoformc protein.
Length = 721
Score = 29.5 bits (63), Expect = 0.40
Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = +2
Query: 95 GDIKNRLRLLADVESEEVTLSMCGAPLEDSCLVSELSSTEL-DLTVPLLGGKVHGSLARA 271
G ++ + L A++ES + + + D+ +++ L L +L PL+ ++HG L A
Sbjct: 528 GSVEKKKMLRAELESNPLGTELAAESIPDTNVIACLIKDFLRELPEPLISPQIHGMLLEA 587
Query: 272 GKV 280
V
Sbjct: 588 ASV 590
>U28741-6|AAO21428.1| 942|Caenorhabditis elegans Synapse defective
protein 1, isoformb protein.
Length = 942
Score = 29.5 bits (63), Expect = 0.40
Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = +2
Query: 95 GDIKNRLRLLADVESEEVTLSMCGAPLEDSCLVSELSSTEL-DLTVPLLGGKVHGSLARA 271
G ++ + L A++ES + + + D+ +++ L L +L PL+ ++HG L A
Sbjct: 726 GSVEKKKMLRAELESNPLGTELAAESIPDTNVIACLIKDFLRELPEPLISPQIHGMLLEA 785
Query: 272 GKV 280
V
Sbjct: 786 ASV 788
>U28741-5|AAO38644.1| 987|Caenorhabditis elegans Synapse defective
protein 1, isoforma protein.
Length = 987
Score = 29.5 bits (63), Expect = 0.40
Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = +2
Query: 95 GDIKNRLRLLADVESEEVTLSMCGAPLEDSCLVSELSSTEL-DLTVPLLGGKVHGSLARA 271
G ++ + L A++ES + + + D+ +++ L L +L PL+ ++HG L A
Sbjct: 794 GSVEKKKMLRAELESNPLGTELAAESIPDTNVIACLIKDFLRELPEPLISPQIHGMLLEA 853
Query: 272 GKV 280
V
Sbjct: 854 ASV 856
>AF546880-1|AAN38752.1| 942|Caenorhabditis elegans axon identity
specification proteinSYD-1 protein.
Length = 942
Score = 29.5 bits (63), Expect = 0.40
Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = +2
Query: 95 GDIKNRLRLLADVESEEVTLSMCGAPLEDSCLVSELSSTEL-DLTVPLLGGKVHGSLARA 271
G ++ + L A++ES + + + D+ +++ L L +L PL+ ++HG L A
Sbjct: 726 GSVEKKKMLRAELESNPLGTELAAESIPDTNVIACLIKDFLRELPEPLISPQIHGMLLEA 785
Query: 272 GKV 280
V
Sbjct: 786 ASV 788
>AF000194-3|AAK39379.1| 191|Caenorhabditis elegans Hypothetical
protein ZC328.5 protein.
Length = 191
Score = 26.6 bits (56), Expect = 2.9
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -2
Query: 273 PARARDPCTLPPRRGTVRSSSVDES 199
P RA+ P T PP TV SS+ +S
Sbjct: 24 PCRAKRPTTEPPSTTTVESSTTRDS 48
>Z81518-1|CAB04214.3| 601|Caenorhabditis elegans Hypothetical
protein F28D9.1 protein.
Length = 601
Score = 22.6 bits (46), Expect(2) = 4.4
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = -2
Query: 276 LPARARDPCTLPPRR 232
+PARA P PPRR
Sbjct: 174 IPARALSPRKTPPRR 188
Score = 21.8 bits (44), Expect(2) = 4.4
Identities = 10/27 (37%), Positives = 13/27 (48%)
Frame = -2
Query: 243 PPRRGTVRSSSVDESSDTRHESSRGAP 163
PPRRG+ R S + RG+P
Sbjct: 216 PPRRGSPRRGSPRRDTRRSPPRRRGSP 242
>AF039044-13|AAG24128.2| 435|Caenorhabditis elegans Hypothetical
protein F48G7.12 protein.
Length = 435
Score = 25.8 bits (54), Expect = 5.0
Identities = 12/30 (40%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
Frame = -1
Query: 136 LNISKKPEAILDITDGFLTIHV--KDVRRL 53
+ +S+K +ILDI DG HV +DV+++
Sbjct: 1 MTVSEKKASILDIGDGLFQTHVQLEDVQKV 30
>AF038618-2|AAB92072.1| 487|Caenorhabditis elegans Hypothetical
protein F42G8.8 protein.
Length = 487
Score = 25.8 bits (54), Expect = 5.0
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = +2
Query: 11 FLIRRYKMQLHIRGQSTHVLDVNGQESIGDIKNRLRLLADVESEEVT 151
F RY + G + V + NG+ SIG ++N L +V ++E+T
Sbjct: 292 FSAPRYMNETDNHGATLKV-ETNGRLSIGRLRNMKALHPNVAADEIT 337
>U23168-5|ABD63247.1| 2702|Caenorhabditis elegans Temporarily
assigned gene nameprotein 308, isoform e protein.
Length = 2702
Score = 25.4 bits (53), Expect = 6.6
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +2
Query: 173 LEDSCLVSELSSTELDLTVPLLGG 244
L+ + EL+ T LDL+V LLGG
Sbjct: 220 LDAKQVTEELAGTTLDLSVRLLGG 243
>U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily assigned
gene nameprotein 308, isoform c protein.
Length = 7548
Score = 25.4 bits (53), Expect = 6.6
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +2
Query: 173 LEDSCLVSELSSTELDLTVPLLGG 244
L+ + EL+ T LDL+V LLGG
Sbjct: 5066 LDAKQVTEELAGTTLDLSVRLLGG 5089
>AF039038-6|AAK21431.2| 629|Caenorhabditis elegans Hypothetical
protein K06A5.1 protein.
Length = 629
Score = 25.4 bits (53), Expect = 6.6
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = -2
Query: 273 PARARDPCTLPPRRGTVRSSSVDESSDTRHESS 175
P + +DP PR+ +R + +S+D + E S
Sbjct: 95 PNKLQDPSEKTPRKTKLRDGKIIDSNDQKQEVS 127
>AC024848-4|AAK68543.2| 1020|Caenorhabditis elegans Hypothetical
protein Y67D8A.1 protein.
Length = 1020
Score = 25.0 bits (52), Expect = 8.7
Identities = 19/63 (30%), Positives = 27/63 (42%)
Frame = +2
Query: 92 IGDIKNRLRLLADVESEEVTLSMCGAPLEDSCLVSELSSTELDLTVPLLGGKVHGSLARA 271
I DIK + +A +MC L + + E LDL V L G ++G R
Sbjct: 357 IDDIKRDIEFVARRWKLAGRPTMC-VVLREENVAGEYFDHILDLLVQLKNGHINGIRVRL 415
Query: 272 GKV 280
G+V
Sbjct: 416 GRV 418
>AC006684-8|AAF39963.2| 132|Caenorhabditis elegans Hypothetical
protein T02H6.3 protein.
Length = 132
Score = 25.0 bits (52), Expect = 8.7
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
Frame = -1
Query: 163 AHRQSHLL---TLNISKKPEAILDITDGFLTIHVK 68
AH QSH + I K A+++ TDGF+T VK
Sbjct: 14 AHVQSHFYYPCSARIFWKIHALINNTDGFVTREVK 48
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,289,276
Number of Sequences: 27780
Number of extensions: 106583
Number of successful extensions: 354
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 339
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 354
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 269889950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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