Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_A20
         (289 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    25   0.19 
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    25   0.19 
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    20   7.0  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    20   7.0  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    19   9.2  

>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 25.0 bits (52), Expect = 0.19
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = -3

Query: 242 HQEEAL*GRAQLMKALTQDMSPQGAHRT*TESPPHS 135
           H+EE L   ++ + A+   ++ Q AH + +E   HS
Sbjct: 585 HREEDLGSESKTINAVVNALAEQAAHASASEESVHS 620


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 25.0 bits (52), Expect = 0.19
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = -3

Query: 242 HQEEAL*GRAQLMKALTQDMSPQGAHRT*TESPPHS 135
           H+EE L   ++ + A+   ++ Q AH + +E   HS
Sbjct: 553 HREEDLGSESKTINAVVNALAEQAAHASASEESVHS 588


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 19.8 bits (39), Expect = 7.0
 Identities = 5/11 (45%), Positives = 7/11 (63%)
 Frame = +3

Query: 243 VKCTDPWLVLV 275
           V C DPW+  +
Sbjct: 328 VSCIDPWIYAI 338


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 19.8 bits (39), Expect = 7.0
 Identities = 5/11 (45%), Positives = 7/11 (63%)
 Frame = +3

Query: 243 VKCTDPWLVLV 275
           V C DPW+  +
Sbjct: 328 VSCIDPWIYAI 338


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 19.4 bits (38), Expect = 9.2
 Identities = 10/31 (32%), Positives = 14/31 (45%)
 Frame = +2

Query: 188 LVSELSSTELDLTVPLLGGKVHGSLARAGKV 280
           LV +  +   DL  PL+  K H  L R   +
Sbjct: 238 LVGKKITHFFDLVRPLIAFKFHSILNRTNNI 268


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 72,751
Number of Sequences: 438
Number of extensions: 1119
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  5744526
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)