Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_A20
(289 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g56670.1 68418.m07074 40S ribosomal protein S30 (RPS30C) 36 0.006
At4g29390.1 68417.m04198 40S ribosomal protein S30 (RPS30B) RIBO... 36 0.006
At2g19750.1 68415.m02307 40S ribosomal protein S30 (RPS30A) 36 0.006
At2g32660.1 68415.m03992 disease resistance family protein / LRR... 33 0.032
At3g06530.1 68416.m00757 BAP28-related similar to Protein BAP28 ... 33 0.042
At2g32350.1 68415.m03954 ubiquitin family protein contains INTER... 28 0.91
At2g25440.1 68415.m03047 leucine-rich repeat family protein cont... 28 1.2
At3g09790.1 68416.m01163 polyubiquitin (UBQ8) identical to polyu... 27 1.6
At4g13810.1 68417.m02140 disease resistance family protein / LRR... 27 2.1
At5g37640.1 68418.m04533 polyubiquitin (UBQ9) identical to polyu... 27 2.8
At3g22050.1 68416.m02781 receptor-like protein kinase-related co... 27 2.8
At4g39450.1 68417.m05582 expressed protein 26 3.7
At3g24954.1 68416.m03124 leucine-rich repeat family protein cont... 26 3.7
At5g40170.1 68418.m04875 disease resistance family protein conta... 26 4.8
At4g38600.2 68417.m05463 HECT-domain-containing protein / ubiqui... 25 6.4
At4g38600.1 68417.m05464 HECT-domain-containing protein / ubiqui... 25 6.4
At2g39630.2 68415.m04859 glycosyl transferase family 2 protein s... 25 6.4
At2g39630.1 68415.m04858 glycosyl transferase family 2 protein s... 25 6.4
At2g27060.1 68415.m03251 leucine-rich repeat transmembrane prote... 25 6.4
At5g18620.2 68418.m02206 DNA-dependent ATPase, putative similar ... 25 8.4
At5g18620.1 68418.m02205 DNA-dependent ATPase, putative similar ... 25 8.4
At4g29240.1 68417.m04182 leucine-rich repeat family protein / ex... 25 8.4
At4g24020.1 68417.m03452 RWP-RK domain-containing protein simila... 25 8.4
At3g61360.1 68416.m06866 pentatricopeptide (PPR) repeat-containi... 25 8.4
At2g33030.1 68415.m04049 leucine-rich repeat family protein cont... 25 8.4
>At5g56670.1 68418.m07074 40S ribosomal protein S30 (RPS30C)
Length = 62
Score = 35.5 bits (78), Expect = 0.006
Identities = 15/16 (93%), Positives = 16/16 (100%)
Frame = +2
Query: 242 GKVHGSLARAGKVKGQ 289
GKVHGSLARAGKV+GQ
Sbjct: 2 GKVHGSLARAGKVRGQ 17
>At4g29390.1 68417.m04198 40S ribosomal protein S30 (RPS30B)
RIBOSOMAL PROTEIN S30 - Arabidopsis
thaliana,PID:e1358183
Length = 62
Score = 35.5 bits (78), Expect = 0.006
Identities = 15/16 (93%), Positives = 16/16 (100%)
Frame = +2
Query: 242 GKVHGSLARAGKVKGQ 289
GKVHGSLARAGKV+GQ
Sbjct: 2 GKVHGSLARAGKVRGQ 17
>At2g19750.1 68415.m02307 40S ribosomal protein S30 (RPS30A)
Length = 62
Score = 35.5 bits (78), Expect = 0.006
Identities = 15/16 (93%), Positives = 16/16 (100%)
Frame = +2
Query: 242 GKVHGSLARAGKVKGQ 289
GKVHGSLARAGKV+GQ
Sbjct: 2 GKVHGSLARAGKVRGQ 17
>At2g32660.1 68415.m03992 disease resistance family protein / LRR
family protein contains leucine rich-repeat domains
Pfam:PF00560, INTERPRO:IPR001611; similar to Cf-4
[Lycopersicon hirsutum] gi|2808683|emb|CAA05268
Length = 589
Score = 33.1 bits (72), Expect = 0.032
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = +2
Query: 68 LDVNGQESIGDIKNRLRLLADVESE-EVTLSMCGAPLEDSCLVSELSSTE 214
+DV+ + G I +++ +S E +CG PLE+SCL + ST+
Sbjct: 484 IDVSDNQLTGKIPQGTQIIGQPKSSFEGNSGLCGLPLEESCLREDAPSTQ 533
>At3g06530.1 68416.m00757 BAP28-related similar to Protein BAP28
(Swiss-Prot:Q9H583) [Homo sapiens]
Length = 1830
Score = 32.7 bits (71), Expect = 0.042
Identities = 17/56 (30%), Positives = 31/56 (55%)
Frame = -1
Query: 172 GRTAHRQSHLLTLNISKKPEAILDITDGFLTIHVKDVRRLTSNVKLHFVSSYQESL 5
GR A + LL L++ EA++D GFL H+ D+ ++ + +VS + ++L
Sbjct: 1413 GRNATAEEQLLMLSVLVTLEAVIDKLGGFLNPHLGDIMKIMV-LHPEYVSDFDKNL 1467
>At2g32350.1 68415.m03954 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 233
Score = 28.3 bits (60), Expect = 0.91
Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 6/60 (10%)
Frame = +2
Query: 68 LDVNGQESIGDIKNRLRLLADVESEEVTLSM-C-----GAPLEDSCLVSELSSTELDLTV 229
++++ QES+ ++K RL + + +TL + C G +ED ++S T +DLTV
Sbjct: 1 MEISEQESVLEVKKRLGQFLQIPTSSITLFVSCWELIDGLDIEDYPIISH--GTRIDLTV 58
>At2g25440.1 68415.m03047 leucine-rich repeat family protein
contains leucine rich-repeat (LRR) domains Pfam:PF00560,
INTERPRO:IPR001611; contains similarity to NL0E
[Lycopersicon esculentum] gi|4235643|gb|AAD13303
Length = 671
Score = 27.9 bits (59), Expect = 1.2
Identities = 13/50 (26%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +2
Query: 68 LDVNGQESIGDIKNRLRLLADVESE-EVTLSMCGAPLEDSCLVSELSSTE 214
+ V+ + G+I ++ ++S E + +CG PLE+ C + S T+
Sbjct: 566 ISVSHNQLKGEIPQGTQITGQLKSSFEGNVGLCGLPLEERCFDNSASPTQ 615
>At3g09790.1 68416.m01163 polyubiquitin (UBQ8) identical to
polyubiquitin (ubq8) GI:870793, GB:L05917 [Arabidopsis
thaliana] (Genetics 139 (2), 921-939 (1995))
Length = 631
Score = 27.5 bits (58), Expect = 1.6
Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Frame = +2
Query: 53 QSTHVLDVNGQESIGDIKNRLRLLADVESEEVTLSMCGAPLEDSCLVSELS---STELDL 223
+ T LDV +SI ++K +++ + ++ L G LED +++ + + L L
Sbjct: 12 EKTITLDVETSDSIHNVKAKIQNKEGIPLDQQRLIFAGKQLEDGLTLADYNIQKESTLHL 71
Query: 224 TVPLLGG 244
+ L GG
Sbjct: 72 VLRLRGG 78
>At4g13810.1 68417.m02140 disease resistance family protein / LRR
family protein contains leucine rich-repeat domains
Pfam:PF00560, INTERPRO:IPR001611; similar to disease
resistance protein [Lycopersicon esculentum]
gi|3894383|gb|AAC78591
Length = 741
Score = 27.1 bits (57), Expect = 2.1
Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 4/91 (4%)
Frame = +2
Query: 8 AFLIRRYKMQLHIRGQSTH-VLDVNGQESIGDIKNRLRLLADVESEEVTLSMCGAPLEDS 184
A + + KM+L G + + +DV+G GDI + LL +V + LSM
Sbjct: 547 ALINKGLKMELVGSGFTIYKTIDVSGNRLEGDIPESIGLLKEV----IVLSMSNNAFTGH 602
Query: 185 C--LVSELSSTE-LDLTVPLLGGKVHGSLAR 268
+S LS+ + LDL+ L G + G L +
Sbjct: 603 IPPSLSNLSNLQSLDLSQNRLSGSIPGELGK 633
>At5g37640.1 68418.m04533 polyubiquitin (UBQ9) identical to
polyubiquitin (ubq9) gene sequence GI:304120 from
[Arabidopsis thaliana]
Length = 322
Score = 26.6 bits (56), Expect = 2.8
Identities = 18/76 (23%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Frame = +2
Query: 32 MQLHIRG--QSTHVLDVNGQESIGDIKNRLRLLADVESEEVTLSMCGAPLEDSCLVSELS 205
MQ+H + + T +DV ++I ++K +++ + + ++ L G L+D +++ S
Sbjct: 3 MQIHAKTLTEKTITIDVVSSDTINNVKAKIQDIEGIPLDQQRLIFSGKLLDDGRTLADYS 62
Query: 206 ---STELDLTVPLLGG 244
+ L L + L GG
Sbjct: 63 IQKDSILHLALRLRGG 78
>At3g22050.1 68416.m02781 receptor-like protein kinase-related
contains Pfam profile: PF01657 Domain of unknown
function; weak similarity to receptor-like protein
kinase homolog RK20-1 (GI:4530126) [Phaseolus vulgaris]
Length = 258
Score = 26.6 bits (56), Expect = 2.8
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = -1
Query: 193 HKT*VLKGRTAHRQSHLLTLNISKKPEAILDITDGFLTI 77
HK V +G+ H + LN+ K D+T GFL +
Sbjct: 39 HKCFVSEGKYKHGDKYENNLNVLNKNVLSYDLTSGFLHV 77
>At4g39450.1 68417.m05582 expressed protein
Length = 1553
Score = 26.2 bits (55), Expect = 3.7
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +2
Query: 131 VESEEVTLSMCGAPLEDSCLVSELSSTE 214
V++ + LS C +P E CL+ L++T+
Sbjct: 614 VKAADAVLSACPSPYEKRCLLQLLAATD 641
>At3g24954.1 68416.m03124 leucine-rich repeat family protein
contains leucine rich-repeat domains Pfam:PF00560,
INTERPRO:IPR001611
Length = 225
Score = 26.2 bits (55), Expect = 3.7
Identities = 12/41 (29%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +2
Query: 68 LDVNGQESIGDIKNRLRLLADVESE-EVTLSMCGAPLEDSC 187
++V+ + IG+I ++ +S E +CG PL++SC
Sbjct: 120 VNVSHNQLIGEIPQGTQITGQPKSSFEGNAGLCGFPLQESC 160
>At5g40170.1 68418.m04875 disease resistance family protein contains
leucine rich-repeat (LRR) domains Pfam:PF00560,
INTERPRO:IPR001611; similar to Cf-4 [Lycopersicon
hirsutum] gi|2808683|emb|CAA05268
Length = 792
Score = 25.8 bits (54), Expect = 4.8
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = +2
Query: 137 SEEVTLSMCGAPLEDSCL 190
S E +++CG PL++SCL
Sbjct: 715 SFEGNINLCGLPLQESCL 732
>At4g38600.2 68417.m05463 HECT-domain-containing protein /
ubiquitin-transferase family protein similar to
SP|Q14669Thyroid receptor interacting protein 12 (TRIP12)
{Homo sapiens}; contains Pfam profile PF00632:
HECT-domain (ubiquitin-transferase)
Length = 1794
Score = 25.4 bits (53), Expect = 6.4
Identities = 15/40 (37%), Positives = 18/40 (45%)
Frame = -2
Query: 273 PARARDPCTLPPRRGTVRSSSVDESSDTRHESSRGAPHID 154
P +P TLP G SS +S TR SSR I+
Sbjct: 903 PIGNTEPGTLPSGAGVSSPSSSTPASTTRRHSSRSRSAIN 942
>At4g38600.1 68417.m05464 HECT-domain-containing protein /
ubiquitin-transferase family protein similar to
SP|Q14669Thyroid receptor interacting protein 12 (TRIP12)
{Homo sapiens}; contains Pfam profile PF00632:
HECT-domain (ubiquitin-transferase)
Length = 1888
Score = 25.4 bits (53), Expect = 6.4
Identities = 15/40 (37%), Positives = 18/40 (45%)
Frame = -2
Query: 273 PARARDPCTLPPRRGTVRSSSVDESSDTRHESSRGAPHID 154
P +P TLP G SS +S TR SSR I+
Sbjct: 976 PIGNTEPGTLPSGAGVSSPSSSTPASTTRRHSSRSRSAIN 1015
>At2g39630.2 68415.m04859 glycosyl transferase family 2 protein
similar to dolichyl-phosphate beta-glucosyltransferase
from Saccharomyces cerevisiae [SP|P40350]; contains Pfam
glycosyltransferase group 2 domain PF00535
Length = 236
Score = 25.4 bits (53), Expect = 6.4
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +2
Query: 29 KMQLHIRGQSTHVLDVNGQESIGDIKNRLRLLADVESEEVTL 154
K LH RGQ +LD +G + D++ + V EE ++
Sbjct: 150 KGMLHSRGQLLLMLDADGATKVTDLEKLENQINAVAREEYSI 191
>At2g39630.1 68415.m04858 glycosyl transferase family 2 protein
similar to dolichyl-phosphate beta-glucosyltransferase
from Saccharomyces cerevisiae [SP|P40350]; contains Pfam
glycosyltransferase group 2 domain PF00535
Length = 336
Score = 25.4 bits (53), Expect = 6.4
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +2
Query: 29 KMQLHIRGQSTHVLDVNGQESIGDIKNRLRLLADVESEEVTL 154
K LH RGQ +LD +G + D++ + V EE ++
Sbjct: 150 KGMLHSRGQLLLMLDADGATKVTDLEKLENQINAVAREEYSI 191
>At2g27060.1 68415.m03251 leucine-rich repeat transmembrane protein
kinase, putative
Length = 1007
Score = 25.4 bits (53), Expect = 6.4
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +2
Query: 170 PLEDSCLVSELSSTELDLTVPLLGGKVHGSLAR 268
PL+D+ V LS T + L+ LGG + L R
Sbjct: 434 PLQDASTVGNLSLTNIGLSHNSLGGVLSEELTR 466
>At5g18620.2 68418.m02206 DNA-dependent ATPase, putative similar to
DNA-dependent ATPase SNF2H [Mus musculus] GI:14028669;
contains Pfam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2 family N-terminal
domain, PF00249: Myb-like DNA-binding domain
Length = 1072
Score = 25.0 bits (52), Expect = 8.4
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +2
Query: 23 RYKMQLHIRGQSTHVLDVNGQESIGD 100
RY MQ H + Q ++V+ E +GD
Sbjct: 804 RYLMQAHQKTQMKDTIEVDEPEEVGD 829
>At5g18620.1 68418.m02205 DNA-dependent ATPase, putative similar to
DNA-dependent ATPase SNF2H [Mus musculus] GI:14028669;
contains Pfam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2 family N-terminal
domain, PF00249: Myb-like DNA-binding domain
Length = 1069
Score = 25.0 bits (52), Expect = 8.4
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +2
Query: 23 RYKMQLHIRGQSTHVLDVNGQESIGD 100
RY MQ H + Q ++V+ E +GD
Sbjct: 804 RYLMQAHQKTQMKDTIEVDEPEEVGD 829
>At4g29240.1 68417.m04182 leucine-rich repeat family protein /
extensin family protein contains Pfam PF00560: Leucine
Rich Repeat domains; similar to leucine-rich
repeat/extensin 1 (GI:13809918) [Arabidopsis thaliana]
Length = 415
Score = 25.0 bits (52), Expect = 8.4
Identities = 20/65 (30%), Positives = 29/65 (44%)
Frame = +2
Query: 50 GQSTHVLDVNGQESIGDIKNRLRLLADVESEEVTLSMCGAPLEDSCLVSELSSTELDLTV 229
GQS +D+N G + L LL+D+ + + + DS S S ELDL+
Sbjct: 113 GQSITSIDLNHANLKGTLVKDLALLSDLNILHLNSNRFSGQIPDS-FKSLASLQELDLSN 171
Query: 230 PLLGG 244
L G
Sbjct: 172 NKLSG 176
>At4g24020.1 68417.m03452 RWP-RK domain-containing protein similar
to nodule inception protein [Lotus japonicus]
GI:6448579; contains Pfam profile: PF02042 RWP-RK domain
Length = 959
Score = 25.0 bits (52), Expect = 8.4
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -2
Query: 246 LPPRRGTVRSSSVDESSDT 190
LPP G RS +VDES+ T
Sbjct: 718 LPPSNGHKRSRTVDESAGT 736
>At3g61360.1 68416.m06866 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 498
Score = 25.0 bits (52), Expect = 8.4
Identities = 10/34 (29%), Positives = 18/34 (52%)
Frame = +2
Query: 188 LVSELSSTELDLTVPLLGGKVHGSLARAGKVKGQ 289
L ++ + D+TV +L +HGS K+K +
Sbjct: 267 LFEDMDRLDFDITVQILTTLIHGSGVARNKIKAR 300
>At2g33030.1 68415.m04049 leucine-rich repeat family protein
contains leucine rich-repeat (LRR) domains Pfam:PF00560,
INTERPRO:IPR001611
Length = 218
Score = 25.0 bits (52), Expect = 8.4
Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +2
Query: 68 LDVNGQESIGDIKNRLRLLADVESE-EVTLSMCGAPLEDSC 187
++V+ + G+I ++ +S E +CG PLE+SC
Sbjct: 112 INVSHNQLKGEIPQGTQITGPPKSSFEGNAGLCGLPLEESC 152
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,021,705
Number of Sequences: 28952
Number of extensions: 101966
Number of successful extensions: 334
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 329
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 334
length of database: 12,070,560
effective HSP length: 69
effective length of database: 10,072,872
effective search space used: 261894672
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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