Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_A19
         (188 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H3.12c |||conserved protein |Schizosaccharomyces pombe|chr...    25   1.7  
SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr 1|...    24   2.3  
SPBPB2B2.01 |||amino acid permease, unknown 12|Schizosaccharomyc...    24   3.0  
SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr...    24   3.0  
SPBC428.13c |mob1||protein kinase regulator Mob1|Schizosaccharom...    24   3.0  
SPAC22H10.08 |||DUF2009 protein|Schizosaccharomyces pombe|chr 1|...    24   3.0  
SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    23   4.0  
SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual    23   7.0  
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo...    23   7.0  
SPBC1289.06c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    23   7.0  
SPBC428.17c |||conserved fungal protein|Schizosaccharomyces pomb...    22   9.3  
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo...    22   9.3  
SPBC16D10.01c ||SPBC418.03c|conserved fungal protein|Schizosacch...    22   9.3  

>SPAC23H3.12c |||conserved protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 226

 Score = 24.6 bits (51), Expect = 1.7
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = +1

Query: 103 YPSNYCAIAQVMLSKTCQQVYTYW 174
           YPS Y A    +  K   ++Y YW
Sbjct: 18  YPSEYLAKKVTIHDKIINRIYKYW 41


>SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 927

 Score = 24.2 bits (50), Expect = 2.3
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -2

Query: 106 GTPYGAL*TMTDLSPSTLTLCHLQLTLK 23
           G P G   T  D+  S LTLC +   L+
Sbjct: 582 GKPIGGTHTPKDVETSILTLCEISRKLR 609


>SPBPB2B2.01 |||amino acid permease, unknown 12|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 585

 Score = 23.8 bits (49), Expect = 3.0
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +1

Query: 58  WTGSDQSLFRGLHKVYPSNYCAIAQVM 138
           W GS +SL+RG       +YC +  ++
Sbjct: 102 WVGSSKSLYRGGAASVLIDYCIVGTMV 128


>SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 501

 Score = 23.8 bits (49), Expect = 3.0
 Identities = 11/30 (36%), Positives = 15/30 (50%), Gaps = 3/30 (10%)
 Frame = +1

Query: 49  ESEWTGS---DQSLFRGLHKVYPSNYCAIA 129
           E  W G    +  +F G   ++PSNYC  A
Sbjct: 456 EGWWVGEKLGEDGVFTGNTGMFPSNYCVPA 485


>SPBC428.13c |mob1||protein kinase regulator
           Mob1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 210

 Score = 23.8 bits (49), Expect = 3.0
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +1

Query: 73  QSLFRGLHKVYPSNYCAIAQVMLS 144
           Q +FR L ++Y   YC+   VM++
Sbjct: 147 QQIFRRLFRIYAHIYCSHFHVMVA 170


>SPAC22H10.08 |||DUF2009 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 492

 Score = 23.8 bits (49), Expect = 3.0
 Identities = 15/53 (28%), Positives = 26/53 (49%)
 Frame = +1

Query: 25  LGLTVGDIESEWTGSDQSLFRGLHKVYPSNYCAIAQVMLSKTCQQVYTYWINT 183
           L LT  D+E +   ++Q    G+H++ P     IA   + +T Q+    WI +
Sbjct: 323 LELTNPDMEYKLIDNNQ----GIHRMQPCPNIRIAMERILRTAQEQSETWIGS 371


>SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 644

 Score = 23.4 bits (48), Expect = 4.0
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = -1

Query: 143 ESITCAIAQ*FEGYTLWSPLNND*SEPVHSDSMSPTVNP 27
           +S + A  Q F  Y     ++N    PV  DS +PT NP
Sbjct: 580 QSTSAACQQCFSQYCWNGTVDNT---PVDDDSKNPTYNP 615


>SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 613

 Score = 22.6 bits (46), Expect = 7.0
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = +1

Query: 13  VYNALGLTVGDIESEWTGSDQSLFRGLH 96
           + N  G     I  E+TG    +FR LH
Sbjct: 225 IMNDFGQCSQPISEEYTGQGCMIFRSLH 252


>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
            Wis4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1401

 Score = 22.6 bits (46), Expect = 7.0
 Identities = 11/37 (29%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = -1

Query: 140  SITCAIAQ*FEGYTLWSPLNND*SEPVHSDSM-SPTV 33
            S+ C I +   G T WS ++N+ +   H  +M +P++
Sbjct: 1233 SLGCVILEMMTGSTPWSEMDNEWAIMYHVAAMHTPSI 1269


>SPBC1289.06c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 481

 Score = 22.6 bits (46), Expect = 7.0
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +1

Query: 127 AQVMLSKTCQQVYTYWIN 180
           A  +L  TC+Q+   W+N
Sbjct: 410 AYCLLPSTCEQISQAWVN 427


>SPBC428.17c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 602

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = +1

Query: 13  VYNALGLTVGDIESEWTGSDQSLFRGLHK 99
           V+N L +TV ++  +     Q++ + LHK
Sbjct: 22  VWNFLDVTVSELNKQKRSPGQTVSKRLHK 50


>SPAC29A4.11 |rga3||GTPase activating protein
           Rga3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 969

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = -1

Query: 56  SDSMSPTVNPKAL 18
           SDS+ PT+N +AL
Sbjct: 302 SDSLKPTINEEAL 314


>SPBC16D10.01c ||SPBC418.03c|conserved fungal
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 336

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +1

Query: 91  LHKVYPSNYCAIAQVMLSKTCQQ 159
           L K     YC+IA++ ++  C Q
Sbjct: 118 LKKKIQGAYCSIAELFMTDLCMQ 140


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 788,078
Number of Sequences: 5004
Number of extensions: 12287
Number of successful extensions: 39
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39
length of database: 2,362,478
effective HSP length: 43
effective length of database: 2,147,306
effective search space used: 40798814
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)