Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_A19
(188 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0752 - 10922456-10922644,10922719-10922796,10922888-109230... 34 0.018
01_06_1300 + 36116511-36116636,36116672-36116734,36117782-361178... 29 0.40
05_01_0247 - 1844275-1844514,1847822-1848140,1848219-1848348,184... 27 2.1
01_06_1385 + 36930377-36930681,36930769-36930895,36931515-36932360 27 2.1
12_02_0790 - 23168952-23169456,23170338-23170467,23170580-23170847 27 2.8
11_06_0737 - 26794015-26794483,26795477-26795606,26796226-26796409 27 2.8
01_06_1354 - 36599904-36600643,36600851-36601352 26 3.7
01_02_0080 + 10933064-10933945 26 3.7
02_05_0787 - 31742685-31742702,31742703-31742744,31742993-317430... 26 4.9
01_06_0448 + 29462920-29463052,29463220-29463349,29463608-294637... 26 4.9
05_05_0103 - 22408832-22410041,22410500-22410628,22411600-224117... 25 6.4
08_02_1595 - 28114751-28114858,28115018-28115283,28116609-281167... 25 8.5
08_01_0327 - 2942640-2943456,2944386-2944515,2944679-2944811 25 8.5
07_03_1747 + 29188568-29188715,29188793-29189541 25 8.5
07_01_0838 - 6811525-6812364,6813085-6813211,6813321-6813670 25 8.5
03_02_0797 - 11296426-11297258,11297745-11297901 25 8.5
03_01_0299 - 2323945-2324422,2324542-2324671,2324763-2324898 25 8.5
01_01_0181 - 1548392-1548466,1548689-1549379,1549475-1549604,154... 25 8.5
>03_02_0752 -
10922456-10922644,10922719-10922796,10922888-10923016,
10923105-10923152,10923243-10923333,10923517-10923648,
10923869-10924086,10925121-10925271,10925360-10926009,
10926715-10926786,10926938-10926985,10927105-10927242,
10927750-10927756,10928064-10928212
Length = 699
Score = 33.9 bits (74), Expect = 0.018
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Frame = +1
Query: 52 SEWTGSDQSLFRGLHKVYPSNYCAIAQVMLS--KTCQQVYTYWINTG 186
S W+ ++ L+ +++ N C IA+ +LS KTC +V +Y N G
Sbjct: 334 SHWSALERDLYLKGIEIFGKNSCLIARNLLSGLKTCMEVASYMYNNG 380
>01_06_1300 +
36116511-36116636,36116672-36116734,36117782-36117833,
36118144-36118224,36118651-36118775,36118831-36118934,
36119487-36119615,36119899-36121054
Length = 611
Score = 29.5 bits (63), Expect = 0.40
Identities = 9/39 (23%), Positives = 20/39 (51%)
Frame = +1
Query: 58 WTGSDQSLFRGLHKVYPSNYCAIAQVMLSKTCQQVYTYW 174
WT ++ H++Y + + IA+V+ +T + +W
Sbjct: 198 WTTEEEQALINAHRIYGNKWAEIAKVLPGRTDNSIKNHW 236
>05_01_0247 -
1844275-1844514,1847822-1848140,1848219-1848348,
1848706-1848883
Length = 288
Score = 27.1 bits (57), Expect = 2.1
Identities = 11/38 (28%), Positives = 19/38 (50%)
Frame = +1
Query: 61 TGSDQSLFRGLHKVYPSNYCAIAQVMLSKTCQQVYTYW 174
T +Q L LH + + + IAQ + +T ++ YW
Sbjct: 86 TADEQLLILDLHSRWGNRWSKIAQYLPGRTDNEIKNYW 123
>01_06_1385 + 36930377-36930681,36930769-36930895,36931515-36932360
Length = 425
Score = 27.1 bits (57), Expect = 2.1
Identities = 12/45 (26%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = +1
Query: 43 DIESE-WTGSDQSLFRGLHKVYPSNYCAIAQVMLSKTCQQVYTYW 174
DI+ + WT D + HK Y + + IA+ + ++ V +W
Sbjct: 142 DIKKDVWTEEDDRMLIEAHKTYGNRWSVIARCLPGRSENAVKNHW 186
>12_02_0790 - 23168952-23169456,23170338-23170467,23170580-23170847
Length = 300
Score = 26.6 bits (56), Expect = 2.8
Identities = 11/39 (28%), Positives = 20/39 (51%)
Frame = +1
Query: 58 WTGSDQSLFRGLHKVYPSNYCAIAQVMLSKTCQQVYTYW 174
+T +Q L LH + + + IAQ + +T ++ YW
Sbjct: 115 FTADEQLLILDLHSRWGNRWSKIAQHLPGRTDNEIKNYW 153
>11_06_0737 - 26794015-26794483,26795477-26795606,26796226-26796409
Length = 260
Score = 26.6 bits (56), Expect = 2.8
Identities = 11/39 (28%), Positives = 20/39 (51%)
Frame = +1
Query: 58 WTGSDQSLFRGLHKVYPSNYCAIAQVMLSKTCQQVYTYW 174
+T +Q L LH + + + IAQ + +T ++ YW
Sbjct: 87 FTAEEQLLILDLHSRWGNRWSKIAQHLPGRTDNEIKNYW 125
>01_06_1354 - 36599904-36600643,36600851-36601352
Length = 413
Score = 26.2 bits (55), Expect = 3.7
Identities = 8/42 (19%), Positives = 23/42 (54%)
Frame = +1
Query: 58 WTGSDQSLFRGLHKVYPSNYCAIAQVMLSKTCQQVYTYWINT 183
+T + + H ++ + + AIA++++ +T + +W +T
Sbjct: 166 FTEEEDRIIMAAHAIHGNKWAAIAKLLVGRTDNAIKNHWNST 207
>01_02_0080 + 10933064-10933945
Length = 293
Score = 26.2 bits (55), Expect = 3.7
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +1
Query: 55 EWTGSDQSLFRGLHKVYPSNYCAIAQVMLSKTCQQVYTYW 174
++T +Q L LH + + + IAQ M +T ++ YW
Sbjct: 78 DFTPQEQLLILELHFRWGNRWSRIAQHMPGRTDNEIKNYW 117
>02_05_0787 -
31742685-31742702,31742703-31742744,31742993-31743022,
31743337-31744183,31744431-31744560,31744682-31744814
Length = 399
Score = 25.8 bits (54), Expect = 4.9
Identities = 10/40 (25%), Positives = 22/40 (55%)
Frame = +1
Query: 55 EWTGSDQSLFRGLHKVYPSNYCAIAQVMLSKTCQQVYTYW 174
++T +++ LH V + + AIA+ + +T ++ YW
Sbjct: 69 KFTSAEKDTILQLHAVLGNKWSAIAKHLPGRTDNEIKNYW 108
>01_06_0448 +
29462920-29463052,29463220-29463349,29463608-29463732,
29463923-29464458
Length = 307
Score = 25.8 bits (54), Expect = 4.9
Identities = 11/38 (28%), Positives = 22/38 (57%)
Frame = +1
Query: 70 DQSLFRGLHKVYPSNYCAIAQVMLSKTCQQVYTYWINT 183
++SL LH+V + + IA+ + +T +V +W +T
Sbjct: 74 EESLIIELHRVLGNRWAQIAKHLPGRTDNEVKNFWNST 111
>05_05_0103 -
22408832-22410041,22410500-22410628,22411600-22411703,
22411780-22411874,22412483-22412540,22412741-22412792,
22415399-22415532
Length = 593
Score = 25.4 bits (53), Expect = 6.4
Identities = 8/39 (20%), Positives = 20/39 (51%)
Frame = +1
Query: 58 WTGSDQSLFRGLHKVYPSNYCAIAQVMLSKTCQQVYTYW 174
WT ++ + H +Y + + IA+++ +T + +W
Sbjct: 162 WTVEEERVLARAHCMYGNKWAEIAKLLPGRTDNSIKNHW 200
>08_02_1595 -
28114751-28114858,28115018-28115283,28116609-28116703,
28117179-28118154,28118245-28118369,28118443-28118569,
28118606-28118843
Length = 644
Score = 25.0 bits (52), Expect = 8.5
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = +2
Query: 50 SQSGRAQISHCLEGSIRCTPQTIAL 124
S S R S GS RC PQTI +
Sbjct: 494 SDSNRDMESMAESGSFRCLPQTIKM 518
>08_01_0327 - 2942640-2943456,2944386-2944515,2944679-2944811
Length = 359
Score = 25.0 bits (52), Expect = 8.5
Identities = 9/39 (23%), Positives = 19/39 (48%)
Frame = +1
Query: 58 WTGSDQSLFRGLHKVYPSNYCAIAQVMLSKTCQQVYTYW 174
+T ++ L LH + + + IA + +T ++ YW
Sbjct: 70 FTAEEEKLIISLHAIVGNRWAHIASHLPGRTDNEIKNYW 108
>07_03_1747 + 29188568-29188715,29188793-29189541
Length = 298
Score = 25.0 bits (52), Expect = 8.5
Identities = 11/38 (28%), Positives = 19/38 (50%)
Frame = +1
Query: 61 TGSDQSLFRGLHKVYPSNYCAIAQVMLSKTCQQVYTYW 174
T +Q L LH + + + IAQ + +T ++ YW
Sbjct: 76 TAEEQLLILELHGRWGNRWSKIAQHLPGRTDNEIKNYW 113
>07_01_0838 - 6811525-6812364,6813085-6813211,6813321-6813670
Length = 438
Score = 25.0 bits (52), Expect = 8.5
Identities = 10/45 (22%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = +1
Query: 43 DIESE-WTGSDQSLFRGLHKVYPSNYCAIAQVMLSKTCQQVYTYW 174
DI+ + WT + + H+ Y +++ AIA+ + ++ + +W
Sbjct: 157 DIKKDIWTEEEDRMLIEAHQTYGNSWSAIAKQLPGRSENTIKNHW 201
>03_02_0797 - 11296426-11297258,11297745-11297901
Length = 329
Score = 25.0 bits (52), Expect = 8.5
Identities = 11/38 (28%), Positives = 19/38 (50%)
Frame = +1
Query: 61 TGSDQSLFRGLHKVYPSNYCAIAQVMLSKTCQQVYTYW 174
T +Q L LH + + + IAQ + +T ++ YW
Sbjct: 79 TPQEQLLILELHSRWGNRWSKIAQHLPGRTDNEIKNYW 116
>03_01_0299 - 2323945-2324422,2324542-2324671,2324763-2324898
Length = 247
Score = 25.0 bits (52), Expect = 8.5
Identities = 9/38 (23%), Positives = 21/38 (55%)
Frame = +1
Query: 61 TGSDQSLFRGLHKVYPSNYCAIAQVMLSKTCQQVYTYW 174
T ++++ LH + + + AIA+ + +T ++ YW
Sbjct: 72 TPDEETVILQLHAMLGNRWSAIARCLPGRTDNEIKNYW 109
>01_01_0181 -
1548392-1548466,1548689-1549379,1549475-1549604,
1549704-1549884
Length = 358
Score = 25.0 bits (52), Expect = 8.5
Identities = 11/38 (28%), Positives = 19/38 (50%)
Frame = +1
Query: 61 TGSDQSLFRGLHKVYPSNYCAIAQVMLSKTCQQVYTYW 174
T +Q L LH + + + IAQ + +T ++ YW
Sbjct: 87 TPEEQLLILELHSRWGNRWSRIAQHLPGRTDNEIKNYW 124
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,161,249
Number of Sequences: 37544
Number of extensions: 81584
Number of successful extensions: 194
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 14,793,348
effective HSP length: 42
effective length of database: 13,216,500
effective search space used: 264330000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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