Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_A19
         (188 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56178| Best HMM Match : No HMM Matches (HMM E-Value=.)              51   2e-07
SB_19291| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   1.4  
SB_37644| Best HMM Match : fn3 (HMM E-Value=1.6e-19)                   27   1.8  
SB_40119| Best HMM Match : PA (HMM E-Value=4.3e-14)                    25   7.4  
SB_53702| Best HMM Match : CUT (HMM E-Value=7.6)                       25   9.7  

>SB_56178| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 632

 Score = 50.8 bits (116), Expect = 2e-07
 Identities = 20/39 (51%), Positives = 31/39 (79%)
 Frame = +1

Query: 49  ESEWTGSDQSLFRGLHKVYPSNYCAIAQVMLSKTCQQVY 165
           +SEW+G++ SL R L  VY +NYC IA+++ +KTC++VY
Sbjct: 286 QSEWSGAEASLLRVLRTVYFNNYCTIAKLIETKTCKEVY 324


>SB_19291| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1258

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 11/45 (24%), Positives = 22/45 (48%)
 Frame = +1

Query: 49  ESEWTGSDQSLFRGLHKVYPSNYCAIAQVMLSKTCQQVYTYWINT 183
           +S WT  +  L    HK   + +  IA+++  +T   +  +W +T
Sbjct: 142 KSSWTEEEDKLIYEAHKKMGNKWAEIAKLLPGRTDNAIKNHWNST 186


>SB_37644| Best HMM Match : fn3 (HMM E-Value=1.6e-19)
          Length = 256

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +1

Query: 22  ALGLTVGDIESEWTGSDQSLFRGLHKVYPSNYCA 123
           A+ +    I  +W+G + SL RG+H+ Y   Y A
Sbjct: 21  AVAINSTSIHVQWSGINTSLTRGIHRGYRIYYQA 54


>SB_40119| Best HMM Match : PA (HMM E-Value=4.3e-14)
          Length = 328

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +1

Query: 4   RGPVYNALGLTVGDIESEWTGSDQSLFR 87
           RG +Y ALG  VGD ++    S + ++R
Sbjct: 184 RGSIYTALGAGVGDPQTPALPSIEGIYR 211


>SB_53702| Best HMM Match : CUT (HMM E-Value=7.6)
          Length = 284

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = +1

Query: 64  GSDQSLFRGLHKVYPSNYCAIAQVMLSKTCQQVYTYW 174
           GS      GL++  PS Y  I  +  ++ C +   YW
Sbjct: 138 GSVTQYMNGLYRNKPSGYQGIFLIEQARCCARPRPYW 174


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,132,343
Number of Sequences: 59808
Number of extensions: 100936
Number of successful extensions: 221
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 221
length of database: 16,821,457
effective HSP length: 41
effective length of database: 14,369,329
effective search space used: 301755909
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)