Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_A19
(188 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81550-2|CAB04478.2| 548|Caenorhabditis elegans Hypothetical pr... 27 2.4
U53180-4|AAA96286.2| 558|Caenorhabditis elegans Suppressor of p... 26 3.2
AY160228-1|AAN62581.1| 558|Caenorhabditis elegans suppressor of... 26 3.2
AF548624-1|AAN59932.1| 558|Caenorhabditis elegans suppressor of... 26 3.2
U58740-2|AAD32276.1| 191|Caenorhabditis elegans Hypothetical pr... 25 5.6
U67952-2|AAB07576.1| 139|Caenorhabditis elegans Hypothetical pr... 25 9.9
U50067-4|AAA93439.3| 1144|Caenorhabditis elegans Sensory axon gu... 25 9.9
U50067-3|AAZ32801.1| 1147|Caenorhabditis elegans Sensory axon gu... 25 9.9
U50067-2|AAY86218.1| 1328|Caenorhabditis elegans Sensory axon gu... 25 9.9
U50067-1|AAZ32800.1| 1331|Caenorhabditis elegans Sensory axon gu... 25 9.9
AC024206-4|AAK67240.1| 564|Caenorhabditis elegans Hypothetical ... 25 9.9
AC024206-3|AAF36052.1| 561|Caenorhabditis elegans Hypothetical ... 25 9.9
AB206670-1|BAD97389.1| 1147|Caenorhabditis elegans SAX-7 SHORTFO... 25 9.9
AB206669-1|BAD97388.1| 1331|Caenorhabditis elegans SAX-7 LONGFOR... 25 9.9
>Z81550-2|CAB04478.2| 548|Caenorhabditis elegans Hypothetical
protein F55F3.2a protein.
Length = 548
Score = 26.6 bits (56), Expect = 2.4
Identities = 19/59 (32%), Positives = 27/59 (45%)
Frame = +1
Query: 4 RGPVYNALGLTVGDIESEWTGSDQSLFRGLHKVYPSNYCAIAQVMLSKTCQQVYTYWIN 180
R P N L +GD+ EW GS+ + LH + S+ A Q+ + TYW N
Sbjct: 317 RDPKKNVL---IGDVHDEWLGSEMN--NVLHNINSSHNTA-HQMRDDLSGSYEMTYWDN 369
>U53180-4|AAA96286.2| 558|Caenorhabditis elegans Suppressor of
presenilin defectprotein 1 protein.
Length = 558
Score = 26.2 bits (55), Expect = 3.2
Identities = 12/41 (29%), Positives = 24/41 (58%)
Frame = +1
Query: 55 EWTGSDQSLFRGLHKVYPSNYCAIAQVMLSKTCQQVYTYWI 177
+WT ++S +Y +++ IA V+ +KT QVY +++
Sbjct: 485 DWTQLERSQVIRCFNMYGAHFEHIADVIGTKTPDQVYQFYL 525
>AY160228-1|AAN62581.1| 558|Caenorhabditis elegans suppressor of
presenilin 1 protein.
Length = 558
Score = 26.2 bits (55), Expect = 3.2
Identities = 12/41 (29%), Positives = 24/41 (58%)
Frame = +1
Query: 55 EWTGSDQSLFRGLHKVYPSNYCAIAQVMLSKTCQQVYTYWI 177
+WT ++S +Y +++ IA V+ +KT QVY +++
Sbjct: 485 DWTQLERSQVIRCFNMYGAHFEHIADVIGTKTPDQVYQFYL 525
>AF548624-1|AAN59932.1| 558|Caenorhabditis elegans suppressor of
presenilin defect protein.
Length = 558
Score = 26.2 bits (55), Expect = 3.2
Identities = 12/41 (29%), Positives = 24/41 (58%)
Frame = +1
Query: 55 EWTGSDQSLFRGLHKVYPSNYCAIAQVMLSKTCQQVYTYWI 177
+WT ++S +Y +++ IA V+ +KT QVY +++
Sbjct: 485 DWTQLERSQVIRCFNMYGAHFEHIADVIGTKTPDQVYQFYL 525
>U58740-2|AAD32276.1| 191|Caenorhabditis elegans Hypothetical
protein R09H3.3 protein.
Length = 191
Score = 25.4 bits (53), Expect = 5.6
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Frame = +1
Query: 10 PVYNALGLTVGDIESEWTGSDQSLFRGL---HKVYPSN 114
P NA+G+T DIE+ + DQ + L K PS+
Sbjct: 147 PPTNAIGITNEDIENSFASGDQLAHQSLIMERKAQPSH 184
>U67952-2|AAB07576.1| 139|Caenorhabditis elegans Hypothetical
protein F39B3.3 protein.
Length = 139
Score = 24.6 bits (51), Expect = 9.9
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -1
Query: 92 SPLNND*SEPVHSDSMSPTVNP 27
SP NND S P ++ PT +P
Sbjct: 45 SPTNNDVSAPGYASRSHPTTDP 66
>U50067-4|AAA93439.3| 1144|Caenorhabditis elegans Sensory axon
guidance protein 7,isoform a protein.
Length = 1144
Score = 24.6 bits (51), Expect = 9.9
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = -2
Query: 82 TMTDLSPSTLTLCHLQLT 29
T+TDL P+TL ++Q+T
Sbjct: 770 TLTDLKPATLNHAYIQVT 787
>U50067-3|AAZ32801.1| 1147|Caenorhabditis elegans Sensory axon
guidance protein 7,isoform d protein.
Length = 1147
Score = 24.6 bits (51), Expect = 9.9
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = -2
Query: 82 TMTDLSPSTLTLCHLQLT 29
T+TDL P+TL ++Q+T
Sbjct: 770 TLTDLKPATLNHAYIQVT 787
>U50067-2|AAY86218.1| 1328|Caenorhabditis elegans Sensory axon
guidance protein 7,isoform b protein.
Length = 1328
Score = 24.6 bits (51), Expect = 9.9
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = -2
Query: 82 TMTDLSPSTLTLCHLQLT 29
T+TDL P+TL ++Q+T
Sbjct: 954 TLTDLKPATLNHAYIQVT 971
>U50067-1|AAZ32800.1| 1331|Caenorhabditis elegans Sensory axon
guidance protein 7,isoform c protein.
Length = 1331
Score = 24.6 bits (51), Expect = 9.9
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = -2
Query: 82 TMTDLSPSTLTLCHLQLT 29
T+TDL P+TL ++Q+T
Sbjct: 954 TLTDLKPATLNHAYIQVT 971
>AC024206-4|AAK67240.1| 564|Caenorhabditis elegans Hypothetical
protein Y74C9A.4b protein.
Length = 564
Score = 24.6 bits (51), Expect = 9.9
Identities = 11/47 (23%), Positives = 20/47 (42%)
Frame = +1
Query: 43 DIESEWTGSDQSLFRGLHKVYPSNYCAIAQVMLSKTCQQVYTYWINT 183
+I +WT + SLF + + I M ++ + Y+ NT
Sbjct: 191 EIHDDWTAEEISLFSTCFFHFGKRFKKIHAAMPQRSLSSIIQYYYNT 237
>AC024206-3|AAF36052.1| 561|Caenorhabditis elegans Hypothetical
protein Y74C9A.4a protein.
Length = 561
Score = 24.6 bits (51), Expect = 9.9
Identities = 11/47 (23%), Positives = 20/47 (42%)
Frame = +1
Query: 43 DIESEWTGSDQSLFRGLHKVYPSNYCAIAQVMLSKTCQQVYTYWINT 183
+I +WT + SLF + + I M ++ + Y+ NT
Sbjct: 188 EIHDDWTAEEISLFSTCFFHFGKRFKKIHAAMPQRSLSSIIQYYYNT 234
>AB206670-1|BAD97389.1| 1147|Caenorhabditis elegans SAX-7 SHORTFORM
protein.
Length = 1147
Score = 24.6 bits (51), Expect = 9.9
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = -2
Query: 82 TMTDLSPSTLTLCHLQLT 29
T+TDL P+TL ++Q+T
Sbjct: 770 TLTDLKPATLNHAYIQVT 787
>AB206669-1|BAD97388.1| 1331|Caenorhabditis elegans SAX-7 LONGFORM
protein.
Length = 1331
Score = 24.6 bits (51), Expect = 9.9
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = -2
Query: 82 TMTDLSPSTLTLCHLQLT 29
T+TDL P+TL ++Q+T
Sbjct: 954 TLTDLKPATLNHAYIQVT 971
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,396,257
Number of Sequences: 27780
Number of extensions: 70181
Number of successful extensions: 189
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 12,740,198
effective HSP length: 42
effective length of database: 11,573,438
effective search space used: 231468760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -