Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_A19
         (188 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   1.0  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    20   3.1  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    19   4.1  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    19   4.1  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    19   4.1  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    19   5.4  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    18   9.5  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.4 bits (43), Expect = 1.0
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -2

Query: 178 LSSTCTPAGKSLRASPA 128
           +++T TP   SL ASPA
Sbjct: 230 MATTSTPGSGSLPASPA 246


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 19.8 bits (39), Expect = 3.1
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = +1

Query: 58  WTGSDQSLFRGL 93
           WT SD  L RGL
Sbjct: 452 WTKSDVDLSRGL 463


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 19.4 bits (38), Expect = 4.1
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +3

Query: 135 DALKDLPAGVHVLD 176
           D L  +  GVH+LD
Sbjct: 10  DILPGITIGVHILD 23


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 19.4 bits (38), Expect = 4.1
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +3

Query: 138 ALKDLPAGVHVLDK 179
           ALK  P   H+LDK
Sbjct: 883 ALKFFPFDKHILDK 896


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 19.4 bits (38), Expect = 4.1
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +3

Query: 135 DALKDLPAGVHVLD 176
           D L  +  GVH+LD
Sbjct: 100 DILPGITIGVHILD 113


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 19.0 bits (37), Expect = 5.4
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -1

Query: 68  EPVHSDSMSPTVNPK 24
           EPV   + SP+ NP+
Sbjct: 502 EPVVETNSSPSPNPR 516


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 18.2 bits (35), Expect = 9.5
 Identities = 7/27 (25%), Positives = 13/27 (48%)
 Frame = -1

Query: 98  LWSPLNND*SEPVHSDSMSPTVNPKAL 18
           LW PL+     P  + ++    N +A+
Sbjct: 756 LWQPLSVSIPPPPSAQNVPQNTNSQAI 782


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 52,400
Number of Sequences: 438
Number of extensions: 729
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 42
effective length of database: 127,947
effective search space used:  2558940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)