Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_A18
(275 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q3UA25 Cluster: Bone marrow macrophage cDNA, RIKEN full... 165 1e-40
UniRef50_P62241 Cluster: 40S ribosomal protein S8; n=93; Eukaryo... 165 1e-40
UniRef50_Q8MLY8 Cluster: 40S ribosomal protein S8; n=82; Eukaryo... 145 1e-34
UniRef50_Q08069 Cluster: 40S ribosomal protein S8; n=21; Eukaryo... 132 1e-30
UniRef50_Q4N3P0 Cluster: 40S ribosomal protein S8; n=4; Eukaryot... 129 1e-29
UniRef50_A6RAQ0 Cluster: Ribosomal protein S8; n=1; Ajellomyces ... 116 1e-25
UniRef50_P25204 Cluster: 40S ribosomal protein S8; n=19; Eukaryo... 109 1e-23
UniRef50_Q5JR95 Cluster: Ribosomal protein S8; n=8; Euteleostomi... 106 8e-23
UniRef50_UPI000049933B Cluster: conserved hypothetical protein; ... 106 1e-22
UniRef50_Q6QP50 Cluster: Putative 40S ribosomal protein S8; n=1;... 91 6e-18
UniRef50_Q7R1W8 Cluster: Ribosomal protein S8; n=1; Giardia lamb... 86 2e-16
UniRef50_Q9AW20 Cluster: 40S ribosomal protein S8; n=1; Guillard... 77 8e-14
UniRef50_Q8SWC9 Cluster: Ribosomal protein S8; n=1; Encephalitoz... 76 1e-13
UniRef50_Q6L0D3 Cluster: 30S ribosomal protein S8e; n=7; Archaea... 63 1e-09
UniRef50_Q3LVX9 Cluster: Ribosomal protein S8; n=1; Bigelowiella... 61 4e-09
UniRef50_Q9HJD0 Cluster: 30S ribosomal protein S8e; n=5; Euryarc... 58 5e-08
UniRef50_A3CSQ2 Cluster: 30S ribosomal protein S8e; n=5; Archaea... 54 5e-07
UniRef50_Q0W1L5 Cluster: 30S ribosomal protein S8e; n=3; Euryarc... 50 1e-05
UniRef50_O58830 Cluster: 30S ribosomal protein S8e; n=6; Archaea... 49 2e-05
UniRef50_Q980W3 Cluster: 30S ribosomal protein S8e; n=4; Archaea... 48 4e-05
UniRef50_Q8TV55 Cluster: 30S ribosomal protein S8e; n=1; Methano... 48 4e-05
UniRef50_A0RXG5 Cluster: Ribosomal protein S8E; n=2; Thermoprote... 44 9e-04
UniRef50_P61300 Cluster: 30S ribosomal protein S8e; n=5; Methano... 42 0.002
UniRef50_Q8ZTB8 Cluster: 30S ribosomal protein S8e; n=6; Archaea... 41 0.006
UniRef50_Q9YDY0 Cluster: 30S ribosomal protein S8e; n=3; Desulfu... 39 0.019
UniRef50_Q2GJW1 Cluster: Phage uncharacterized protein; n=1; Ana... 35 0.31
UniRef50_Q2W531 Cluster: TPR repeat; n=3; Magnetospirillum|Rep: ... 35 0.40
UniRef50_UPI0000F2CAD6 Cluster: PREDICTED: hypothetical protein;... 33 0.93
UniRef50_A1RX37 Cluster: Ribosomal protein S8e; n=1; Thermofilum... 33 0.93
UniRef50_UPI0000585237 Cluster: PREDICTED: similar to cardioacce... 33 1.6
UniRef50_Q7XEZ3 Cluster: Putative uncharacterized protein; n=1; ... 33 1.6
UniRef50_A0P207 Cluster: Putative uncharacterized protein; n=1; ... 31 3.8
UniRef50_A0IYI1 Cluster: Putative uncharacterized protein; n=1; ... 31 3.8
UniRef50_UPI0000DD863F Cluster: PREDICTED: hypothetical protein;... 31 5.0
UniRef50_Q2CBN7 Cluster: Na+/H+ antiporter, CPA1 family protein;... 31 6.6
UniRef50_A7D873 Cluster: Exodeoxyribonuclease III Xth; n=2; Meth... 31 6.6
UniRef50_O74304 Cluster: MAP kinase kinase kinase win1; n=1; Sch... 31 6.6
UniRef50_UPI00006A1942 Cluster: Ral GEF with PH domain and SH3 b... 30 8.7
UniRef50_Q7P079 Cluster: Putative uncharacterized protein; n=1; ... 30 8.7
UniRef50_Q3VZV5 Cluster: Putative uncharacterized protein; n=3; ... 30 8.7
UniRef50_A0V4W3 Cluster: Peptidoglycan-binding LysM; n=2; Comamo... 30 8.7
UniRef50_Q8NFD8 Cluster: Platelet receptor for type III collagen... 30 8.7
>UniRef50_Q3UA25 Cluster: Bone marrow macrophage cDNA, RIKEN
full-length enriched library, clone:I830031J02
product:ribosomal protein S8, full insert sequence; n=9;
Deuterostomia|Rep: Bone marrow macrophage cDNA, RIKEN
full-length enriched library, clone:I830031J02
product:ribosomal protein S8, full insert sequence - Mus
musculus (Mouse)
Length = 152
Score = 165 bits (402), Expect = 1e-40
Identities = 74/87 (85%), Positives = 78/87 (89%)
Frame = +3
Query: 15 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALRL 194
MGISRD+WHKRR TGGKR P KKRKYELGRPAANTK+GP+RIH VR RGGN KYRALRL
Sbjct: 1 MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRL 60
Query: 195 DTGNFAWGSECSTRKTRIIDVVYNASN 275
D GNF+WGSEC TRKTRIIDVVYNASN
Sbjct: 61 DVGNFSWGSECCTRKTRIIDVVYNASN 87
>UniRef50_P62241 Cluster: 40S ribosomal protein S8; n=93;
Eukaryota|Rep: 40S ribosomal protein S8 - Homo sapiens
(Human)
Length = 208
Score = 165 bits (402), Expect = 1e-40
Identities = 74/87 (85%), Positives = 78/87 (89%)
Frame = +3
Query: 15 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALRL 194
MGISRD+WHKRR TGGKR P KKRKYELGRPAANTK+GP+RIH VR RGGN KYRALRL
Sbjct: 1 MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRL 60
Query: 195 DTGNFAWGSECSTRKTRIIDVVYNASN 275
D GNF+WGSEC TRKTRIIDVVYNASN
Sbjct: 61 DVGNFSWGSECCTRKTRIIDVVYNASN 87
>UniRef50_Q8MLY8 Cluster: 40S ribosomal protein S8; n=82;
Eukaryota|Rep: 40S ribosomal protein S8 - Drosophila
melanogaster (Fruit fly)
Length = 208
Score = 145 bits (352), Expect = 1e-34
Identities = 69/87 (79%), Positives = 74/87 (85%)
Frame = +3
Query: 15 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALRL 194
MGISRD HKRRATGGKR +RKKRK+ELGRPAANTKLG R+H VR+RGGNTK RALRL
Sbjct: 1 MGISRDSAHKRRATGGKRKSLRKKRKFELGRPAANTKLGSGRVHKVRTRGGNTKLRALRL 60
Query: 195 DTGNFAWGSECSTRKTRIIDVVYNASN 275
+TGNFAW SE RKTRI DVVYNASN
Sbjct: 61 ETGNFAWASEGVARKTRIADVVYNASN 87
>UniRef50_Q08069 Cluster: 40S ribosomal protein S8; n=21;
Eukaryota|Rep: 40S ribosomal protein S8 - Zea mays
(Maize)
Length = 221
Score = 132 bits (320), Expect = 1e-30
Identities = 64/88 (72%), Positives = 71/88 (80%), Gaps = 1/88 (1%)
Frame = +3
Query: 15 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQR-IHLVRSRGGNTKYRALR 191
MGISRD HKRRATGGK+ RKKRKYELGR ANTKL + + VR RGGN K+RALR
Sbjct: 1 MGISRDSMHKRRATGGKQKAWRKKRKYELGRQPANTKLSSNKTVRRVRVRGGNVKWRALR 60
Query: 192 LDTGNFAWGSECSTRKTRIIDVVYNASN 275
LDTGN++WGSE TRKTRI+DVVYNASN
Sbjct: 61 LDTGNYSWGSEAVTRKTRILDVVYNASN 88
>UniRef50_Q4N3P0 Cluster: 40S ribosomal protein S8; n=4;
Eukaryota|Rep: 40S ribosomal protein S8 - Theileria
parva
Length = 188
Score = 129 bits (311), Expect = 1e-29
Identities = 59/87 (67%), Positives = 72/87 (82%)
Frame = +3
Query: 15 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALRL 194
MGISRD HKRR TGG+ +KKRKYELGRP++NTKLG + + VR RGGN K+RALRL
Sbjct: 1 MGISRDSRHKRRLTGGRYPVHKKKRKYELGRPSSNTKLGSKLVRKVRCRGGNLKFRALRL 60
Query: 195 DTGNFAWGSECSTRKTRIIDVVYNASN 275
D+GNF+WGS+ TRKTR++DVVYNAS+
Sbjct: 61 DSGNFSWGSQNVTRKTRVMDVVYNASS 87
>UniRef50_A6RAQ0 Cluster: Ribosomal protein S8; n=1; Ajellomyces
capsulatus NAm1|Rep: Ribosomal protein S8 - Ajellomyces
capsulatus NAm1
Length = 141
Score = 116 bits (278), Expect = 1e-25
Identities = 53/81 (65%), Positives = 64/81 (79%)
Frame = +3
Query: 15 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALRL 194
MGISRD HKR ATG KR+ RKKR +E GR ANT++GP+RIHLVR+RGGN K+R LRL
Sbjct: 1 MGISRDSRHKRSATGAKRSHYRKKRAFEKGRQPANTRIGPKRIHLVRTRGGNQKFRGLRL 60
Query: 195 DTGNFAWGSECSTRKTRIIDV 257
++GNF+WGSE RK R+I V
Sbjct: 61 ESGNFSWGSEGIARKVRVIVV 81
>UniRef50_P25204 Cluster: 40S ribosomal protein S8; n=19;
Eukaryota|Rep: 40S ribosomal protein S8 - Leishmania
major
Length = 220
Score = 109 bits (262), Expect = 1e-23
Identities = 52/87 (59%), Positives = 63/87 (72%)
Frame = +3
Query: 15 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALRL 194
MGI R HKR+ TGGK RK+ K ELGR ANT+LG +R+ VR+RGGN K RALRL
Sbjct: 1 MGIVRSRLHKRKITGGKTKIHRKRMKAELGRLPANTRLGARRVSPVRARGGNFKIRALRL 60
Query: 195 DTGNFAWGSECSTRKTRIIDVVYNASN 275
DTGNFAW SE + R++DVVYNA++
Sbjct: 61 DTGNFAWASEAIAHRVRLLDVVYNATS 87
>UniRef50_Q5JR95 Cluster: Ribosomal protein S8; n=8;
Euteleostomi|Rep: Ribosomal protein S8 - Homo sapiens
(Human)
Length = 188
Score = 106 bits (255), Expect = 8e-23
Identities = 58/87 (66%), Positives = 61/87 (70%)
Frame = +3
Query: 15 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALRL 194
MGISRD+WHKRR TGGKR P KKRKYELGRPAANTK+GP+RIH VR RGG
Sbjct: 1 MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGG--------- 51
Query: 195 DTGNFAWGSECSTRKTRIIDVVYNASN 275
C TRKTRIIDVVYNASN
Sbjct: 52 ----------C-TRKTRIIDVVYNASN 67
>UniRef50_UPI000049933B Cluster: conserved hypothetical protein;
n=3; Entamoeba histolytica HM-1:IMSS|Rep: conserved
hypothetical protein - Entamoeba histolytica HM-1:IMSS
Length = 237
Score = 106 bits (254), Expect = 1e-22
Identities = 50/87 (57%), Positives = 66/87 (75%)
Frame = +3
Query: 15 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALRL 194
MGI+RD HKRRATGGK+ ++KK+K +GR ANT+LG R+H VR R G K RALRL
Sbjct: 1 MGITRDSRHKRRATGGKKNSMQKKKKNTMGRQPANTRLGAIRVHDVRCRYGIIKRRALRL 60
Query: 195 DTGNFAWGSECSTRKTRIIDVVYNASN 275
+ GNF+W S+ T+ T+I++VVYNAS+
Sbjct: 61 ENGNFSWASQSITKGTKILNVVYNASD 87
>UniRef50_Q6QP50 Cluster: Putative 40S ribosomal protein S8; n=1;
Zea mays|Rep: Putative 40S ribosomal protein S8 - Zea
mays (Maize)
Length = 245
Score = 90.6 bits (215), Expect = 6e-18
Identities = 43/73 (58%), Positives = 55/73 (75%), Gaps = 1/73 (1%)
Frame = +3
Query: 60 GKRAPIRKKRKYELGRPAANTKLGPQR-IHLVRSRGGNTKYRALRLDTGNFAWGSECSTR 236
G P+++++ YELGR ANTKL + + VR RGGNTK+RALR DT N++WGSE TR
Sbjct: 113 GPFCPLQEEQGYELGRQPANTKLSSNKTVRRVRVRGGNTKWRALRFDTCNYSWGSEALTR 172
Query: 237 KTRIIDVVYNASN 275
KTRI+DVVY A+N
Sbjct: 173 KTRILDVVYIATN 185
>UniRef50_Q7R1W8 Cluster: Ribosomal protein S8; n=1; Giardia lamblia
ATCC 50803|Rep: Ribosomal protein S8 - Giardia lamblia
ATCC 50803
Length = 174
Score = 85.8 bits (203), Expect = 2e-16
Identities = 47/96 (48%), Positives = 58/96 (60%), Gaps = 9/96 (9%)
Frame = +3
Query: 15 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKL---------GPQRIHLVRSRGG 167
MGI+ D +KR TG + KKRKY LGR ANTKL Q+I +R RGG
Sbjct: 1 MGITHDKMYKRSKTGAVQGKWHKKRKYNLGRQPANTKLIVKVTSKKNEGQKISTIRCRGG 60
Query: 168 NTKYRALRLDTGNFAWGSECSTRKTRIIDVVYNASN 275
N K RALRL G+FAWGS + K RI+ VVYN+++
Sbjct: 61 NIKRRALRLSHGSFAWGSADISHKARILQVVYNSTS 96
>UniRef50_Q9AW20 Cluster: 40S ribosomal protein S8; n=1; Guillardia
theta|Rep: 40S ribosomal protein S8 - Guillardia theta
(Cryptomonas phi)
Length = 178
Score = 77.0 bits (181), Expect = 8e-14
Identities = 39/87 (44%), Positives = 57/87 (65%)
Frame = +3
Query: 15 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALRL 194
MGI+R+ HKR++TGG ++ RKKR + GR +NTK+G + + +R RGG K RAL L
Sbjct: 1 MGINREGLHKRKSTGGLKSCWRKKRNHAKGRQPSNTKIGRRCVVKLRVRGGGVKTRALFL 60
Query: 195 DTGNFAWGSECSTRKTRIIDVVYNASN 275
GNF++ S T K +I+ V +N S+
Sbjct: 61 SYGNFSFVSIQRTFKAKILSVAFNESS 87
>UniRef50_Q8SWC9 Cluster: Ribosomal protein S8; n=1; Encephalitozoon
cuniculi|Rep: Ribosomal protein S8 - Encephalitozoon
cuniculi
Length = 173
Score = 76.2 bits (179), Expect = 1e-13
Identities = 38/87 (43%), Positives = 54/87 (62%)
Frame = +3
Query: 15 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALRL 194
MGI+ HKRR TG K RKKR G ++TK+G +++ VR RGGN KY+ALRL
Sbjct: 1 MGINHRGDHKRRKTGAKAVISRKKRNNRAGSQPSSTKIGERKVTPVRVRGGNRKYKALRL 60
Query: 195 DTGNFAWGSECSTRKTRIIDVVYNASN 275
D G+F + + R +++ VVY+ S+
Sbjct: 61 DMGHFKFITTGKFRMAKLLQVVYHPSS 87
>UniRef50_Q6L0D3 Cluster: 30S ribosomal protein S8e; n=7;
Archaea|Rep: 30S ribosomal protein S8e - Picrophilus
torridus
Length = 125
Score = 62.9 bits (146), Expect = 1e-09
Identities = 31/77 (40%), Positives = 46/77 (59%)
Frame = +3
Query: 45 RRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALRLDTGNFAWGSE 224
R+ +GGK P KR+YELGR T+LG + + +RS GGN+K+ LR D N +
Sbjct: 10 RKPSGGKLRPNHSKRRYELGREPTLTRLGDRELRKIRSYGGNSKFALLRCDYANVYNPKD 69
Query: 225 CSTRKTRIIDVVYNASN 275
+TRK +I V N+++
Sbjct: 70 KTTRKVKINTVKENSAD 86
>UniRef50_Q3LVX9 Cluster: Ribosomal protein S8; n=1; Bigelowiella
natans|Rep: Ribosomal protein S8 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 176
Score = 61.3 bits (142), Expect = 4e-09
Identities = 29/79 (36%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Frame = +3
Query: 42 KRRATGGKRAPIRKKRKYELGRPAANTKLGPQR-IHLVRSRGGNTKYRALRLDTGNFAWG 218
K++ TGGK+ I KK+ + G NT L I + R RGGN K++A+ L G+F W
Sbjct: 3 KKKLTGGKKKKISKKKNHSKGNNPTNTVLRRANFIKMTRVRGGNFKFKAISLGKGSFQWK 62
Query: 219 SECSTRKTRIIDVVYNASN 275
+ ++ ++I+ V+YN +N
Sbjct: 63 TMQLSKNSKILSVLYNQAN 81
>UniRef50_Q9HJD0 Cluster: 30S ribosomal protein S8e; n=5;
Euryarchaeota|Rep: 30S ribosomal protein S8e -
Thermoplasma acidophilum
Length = 127
Score = 57.6 bits (133), Expect = 5e-08
Identities = 32/78 (41%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Frame = +3
Query: 45 RRATGGKRAPIRKKRKYELGRPAANTKLGPQ-RIHLVRSRGGNTKYRALRLDTGNFAWGS 221
++ATGG RKKR++ELGR TKLG + ++R+ GGNTK +T N S
Sbjct: 10 KKATGGSLKQSRKKRRFELGREPTLTKLGTKTERKVIRTMGGNTKVILFTAETANVYDAS 69
Query: 222 ECSTRKTRIIDVVYNASN 275
E +K +II V N +N
Sbjct: 70 EKKIKKAKIITVKANPAN 87
>UniRef50_A3CSQ2 Cluster: 30S ribosomal protein S8e; n=5;
Archaea|Rep: 30S ribosomal protein S8e - Methanoculleus
marisnigri (strain ATCC 35101 / DSM 1498 / JR1)
Length = 125
Score = 54.4 bits (125), Expect = 5e-07
Identities = 28/77 (36%), Positives = 47/77 (61%)
Frame = +3
Query: 45 RRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALRLDTGNFAWGSE 224
R+ +GG+ + K++ E+GR A T +G +R +VR+ GGN K RALRL+ + +
Sbjct: 9 RKPSGGRYHTSQGKKRTEIGRAPAETHIGEERRRIVRTFGGNQKVRALRLEYATVSNPAT 68
Query: 225 CSTRKTRIIDVVYNASN 275
T+KT+I V N+++
Sbjct: 69 GETKKTKIEAVEANSAD 85
>UniRef50_Q0W1L5 Cluster: 30S ribosomal protein S8e; n=3;
Euryarchaeota|Rep: 30S ribosomal protein S8e -
Uncultured methanogenic archaeon RC-I
Length = 125
Score = 49.6 bits (113), Expect = 1e-05
Identities = 26/77 (33%), Positives = 40/77 (51%)
Frame = +3
Query: 45 RRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALRLDTGNFAWGSE 224
R+ATGG+ R KRK+ELGR +G Q++ ++ G +K R L+ D N
Sbjct: 9 RKATGGRLRLNRSKRKFELGRDFTIPVIGAQKLKVLNVTGNGSKVRVLKSDVVNVTDPKT 68
Query: 225 CSTRKTRIIDVVYNASN 275
T+K ++ V N +N
Sbjct: 69 GKTQKVKMTTVTENPAN 85
>UniRef50_O58830 Cluster: 30S ribosomal protein S8e; n=6;
Archaea|Rep: 30S ribosomal protein S8e - Pyrococcus
horikoshii
Length = 127
Score = 48.8 bits (111), Expect = 2e-05
Identities = 29/78 (37%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Frame = +3
Query: 45 RRATGGKRAPIRKKRKYELGRPAANTKLGPQ-RIHLVRSRGGNTKYRALRLDTGNFAWGS 221
++ +GG+ RKKRK ELGR +NT++ Q + ++R+ GGN K R N +
Sbjct: 10 KKPSGGRIVLARKKRKRELGREPSNTRVAEQDKRKIIRTYGGNRKVRLTAAAYAN-VFDK 68
Query: 222 ECSTRKTRIIDVVYNASN 275
RK RII V+ N +N
Sbjct: 69 SGKGRKVRIIRVLENPAN 86
>UniRef50_Q980W3 Cluster: 30S ribosomal protein S8e; n=4;
Archaea|Rep: 30S ribosomal protein S8e - Sulfolobus
solfataricus
Length = 133
Score = 48.0 bits (109), Expect = 4e-05
Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Frame = +3
Query: 45 RRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLV-RSRGGNTKYRALRLDTGNFAWGS 221
R+ TGG + R KRKYE+G P T L + I + R+ GGN K R T N +
Sbjct: 10 RKITGGLKGKHRDKRKYEIGNPPTFTTLSAEDIRIKDRTLGGNFKVRLKYTTTANVLDPA 69
Query: 222 ECSTRKTRIIDVVYNASN 275
+ +K +I++++ +N
Sbjct: 70 TNTAKKVKILEILETPAN 87
>UniRef50_Q8TV55 Cluster: 30S ribosomal protein S8e; n=1;
Methanopyrus kandleri|Rep: 30S ribosomal protein S8e -
Methanopyrus kandleri
Length = 133
Score = 48.0 bits (109), Expect = 4e-05
Identities = 32/85 (37%), Positives = 45/85 (52%), Gaps = 5/85 (5%)
Frame = +3
Query: 36 WHKR---RATGGKRAPIRKKRKYELGRPAANTKLGPQR-IHLVRSRGGNTKYRALRLDT- 200
WH R + TGG+ P RKKRK+E+G P T +G +R + R GGN K + L+ T
Sbjct: 4 WHGRSLRKPTGGRIRPHRKKRKFEMGNPPTETLVGEERKLKERRGMGGNVK-KGLKFATH 62
Query: 201 GNFAWGSECSTRKTRIIDVVYNASN 275
N A + RI +VV N ++
Sbjct: 63 ANVADPETGEVKCVRIEEVVKNPAS 87
>UniRef50_A0RXG5 Cluster: Ribosomal protein S8E; n=2;
Thermoprotei|Rep: Ribosomal protein S8E - Cenarchaeum
symbiosum
Length = 129
Score = 43.6 bits (98), Expect = 9e-04
Identities = 25/76 (32%), Positives = 38/76 (50%)
Frame = +3
Query: 48 RATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALRLDTGNFAWGSEC 227
+ TGG+R P+R +RKYE+ R G Q + RG TK +D N A
Sbjct: 12 KLTGGRRHPLRTRRKYEIDRYPNEALSGAQETVTRKVRGKRTKTALKTIDFVNLA-VQGA 70
Query: 228 STRKTRIIDVVYNASN 275
+K++I+ V+ N +N
Sbjct: 71 KVKKSKIVKVLENPTN 86
>UniRef50_P61300 Cluster: 30S ribosomal protein S8e; n=5;
Methanococcus|Rep: 30S ribosomal protein S8e -
Methanococcus maripaludis
Length = 128
Score = 42.3 bits (95), Expect = 0.002
Identities = 25/79 (31%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Frame = +3
Query: 42 KRRATGGKRAPIRKKRKYELGRPAANTKLGPQ-RIHLVRSRGGNTKYRALRLDTGNFAWG 218
+R +TG K KK K E+GRPAA T++ + + +VR RG N K + + + N
Sbjct: 9 RRLSTGAKVWRAAKKHKREMGRPAAETQVSDKIKRKIVRCRGANLKVKLEKTNYANVFDQ 68
Query: 219 SECSTRKTRIIDVVYNASN 275
+ +K + +V+ N +N
Sbjct: 69 ANKVCKKVVVTNVIDNKAN 87
>UniRef50_Q8ZTB8 Cluster: 30S ribosomal protein S8e; n=6;
Archaea|Rep: 30S ribosomal protein S8e - Pyrobaculum
aerophilum
Length = 131
Score = 40.7 bits (91), Expect = 0.006
Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Frame = +3
Query: 45 RRATGGKRAPIRKKRKYEL-GRPAANTKLGPQRIHLV-RSRGGNTKYRALRLDTGNFAWG 218
++ +GGK+ +RK +K L G P KLG +V R RGGN K R N
Sbjct: 13 KKPSGGKKRKVRKTKKKALGGGPPQIPKLGENDTRIVERVRGGNLKVRLREAKFANVYIP 72
Query: 219 SECSTRKTRIIDVVYNASN 275
E + K +II ++ +N
Sbjct: 73 KERKSVKAKIISIISTPAN 91
>UniRef50_Q9YDY0 Cluster: 30S ribosomal protein S8e; n=3;
Desulfurococcales|Rep: 30S ribosomal protein S8e -
Aeropyrum pernix
Length = 136
Score = 39.1 bits (87), Expect = 0.019
Identities = 31/87 (35%), Positives = 44/87 (50%), Gaps = 5/87 (5%)
Frame = +3
Query: 15 MGISRDHWH-KRRATGGKRAPIRK-KRKYELGRPAANTKLG---PQRIHLVRSRGGNTKY 179
MGI + W K++ +GGKR K KRKY GRP T L + VR+RGG+ K
Sbjct: 1 MGIYQ--WRDKKKPSGGKRRYYYKVKRKYAAGRPPTYTTLSAAEEEERKPVRARGGSYKI 58
Query: 180 RALRLDTGNFAWGSECSTRKTRIIDVV 260
+A ++ + RK RI+ +V
Sbjct: 59 KAKKVAFAVVSNPKTGEARKARILRIV 85
>UniRef50_Q2GJW1 Cluster: Phage uncharacterized protein; n=1;
Anaplasma phagocytophilum HZ|Rep: Phage uncharacterized
protein - Anaplasma phagocytophilum (strain HZ)
Length = 445
Score = 35.1 bits (77), Expect = 0.31
Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
Frame = -2
Query: 199 VSRRRARYLVLPPRDLTKWMRWGPSLVLAAGRPNSYFLFLRMGARLPPVAL---LLCQ*S 29
V R +A Y L R L W P ++L R + Y L M +LP +A C+ S
Sbjct: 314 VYRAKANYTELKKRVLHLSEHWKPDVILIEERSSGYQLLQEMSKKLPVIAFNPKKYCKLS 373
Query: 28 RLIPILALV 2
RL+ I+ +
Sbjct: 374 RLLQIIPTI 382
>UniRef50_Q2W531 Cluster: TPR repeat; n=3; Magnetospirillum|Rep: TPR
repeat - Magnetospirillum magneticum (strain AMB-1 /
ATCC 700264)
Length = 556
Score = 34.7 bits (76), Expect = 0.40
Identities = 16/37 (43%), Positives = 20/37 (54%)
Frame = +3
Query: 51 ATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSR 161
A G +RAP K YE R AA T+L P + +R R
Sbjct: 268 ALGAERAPANLKANYEKERDAAGTRLSPAELEALRGR 304
>UniRef50_UPI0000F2CAD6 Cluster: PREDICTED: hypothetical protein;
n=1; Monodelphis domestica|Rep: PREDICTED: hypothetical
protein - Monodelphis domestica
Length = 130
Score = 33.5 bits (73), Expect = 0.93
Identities = 27/73 (36%), Positives = 31/73 (42%), Gaps = 4/73 (5%)
Frame = +3
Query: 24 SRDHWHK--RRATGGKRAPIRKKRKYELG--RPAANTKLGPQRIHLVRSRGGNTKYRALR 191
SR H H R GG P+ G R A +LG R+ L R RGG + R R
Sbjct: 27 SRGHGHAPARPGGGGGGGPLHALAARVGGERRAARARRLG--RVGLPRGRGGGARARKER 84
Query: 192 LDTGNFAWGSECS 230
G A GS CS
Sbjct: 85 ARAGRLAGGSRCS 97
>UniRef50_A1RX37 Cluster: Ribosomal protein S8e; n=1; Thermofilum
pendens Hrk 5|Rep: Ribosomal protein S8e - Thermofilum
pendens (strain Hrk 5)
Length = 128
Score = 33.5 bits (73), Expect = 0.93
Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
Frame = +3
Query: 45 RRATGG-KRAPIRKKRKYELGR-PAANTKLGPQRIHLVRSRGGNTKYRALRLDTGNFAWG 218
R+ TGG K ++ KRKY GR P + +V++RG K + N
Sbjct: 10 RKITGGIKGRHVKTKRKYLSGRYPILTVPGQATEVKVVKARGNTYKLKVKVASEVNVYIP 69
Query: 219 SECSTRKTRIIDVVYNASN 275
E T + +II V+ N SN
Sbjct: 70 KEGKTVRAQIIKVLDNPSN 88
>UniRef50_UPI0000585237 Cluster: PREDICTED: similar to
cardioacceleratory peptide receptor; n=1;
Strongylocentrotus purpuratus|Rep: PREDICTED: similar to
cardioacceleratory peptide receptor - Strongylocentrotus
purpuratus
Length = 416
Score = 32.7 bits (71), Expect = 1.6
Identities = 19/43 (44%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +3
Query: 3 TRAKMGISRDHWHKRRATGGKRAP-IRKKRKYELGRPAANTKL 128
T A + IS+ W K T GKR+ KK K EL R A++T L
Sbjct: 223 TVAYLRISKKIWDKAHETSGKRSKRASKKNKIELNRNASSTTL 265
>UniRef50_Q7XEZ3 Cluster: Putative uncharacterized protein; n=1;
Oryza sativa (japonica cultivar-group)|Rep: Putative
uncharacterized protein - Oryza sativa subsp. japonica
(Rice)
Length = 192
Score = 32.7 bits (71), Expect = 1.6
Identities = 25/55 (45%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Frame = +3
Query: 51 ATGGKRAPIRKKRKYELGR-PAANTKLGPQRIHLVRSRGGNTKYRALRLDTGNFA 212
A GGKR KK+ GR PA NT L P ++HL+ RGGN R L + G+ A
Sbjct: 28 ADGGKR----KKQSSCGGRIPALNT-LTPLKLHLLLERGGNGGQRLLGVRRGDGA 77
>UniRef50_A0P207 Cluster: Putative uncharacterized protein; n=1;
Stappia aggregata IAM 12614|Rep: Putative
uncharacterized protein - Stappia aggregata IAM 12614
Length = 636
Score = 31.5 bits (68), Expect = 3.8
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -2
Query: 169 LPPRDLTKWMRWGPSLVLAAGRPNSYFLFL 80
LPP D ++ WGPS L+ G+ +Y FL
Sbjct: 328 LPPVDPGEYSTWGPSFPLSEGKDQAYIGFL 357
>UniRef50_A0IYI1 Cluster: Putative uncharacterized protein; n=1;
Shewanella woodyi ATCC 51908|Rep: Putative
uncharacterized protein - Shewanella woodyi ATCC 51908
Length = 147
Score = 31.5 bits (68), Expect = 3.8
Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = +1
Query: 151 SDPVVVTLNIVPC-VLILETSHGDLNVQPARLVLLMLFIM 267
SD + V L+ +P V +L SH + QP +LLMLFIM
Sbjct: 48 SDVMFVNLDAMPKRVALLSRSHDNQYQQPLLFILLMLFIM 87
>UniRef50_UPI0000DD863F Cluster: PREDICTED: hypothetical protein;
n=1; Homo sapiens|Rep: PREDICTED: hypothetical protein -
Homo sapiens
Length = 251
Score = 31.1 bits (67), Expect = 5.0
Identities = 16/36 (44%), Positives = 18/36 (50%)
Frame = +3
Query: 3 TRAKMGISRDHWHKRRATGGKRAPIRKKRKYELGRP 110
TR + G SR WH RR G +R R R E G P
Sbjct: 101 TRGRPGGSRRPWHGRRVIGARRGRDRGGRGEEEGMP 136
>UniRef50_Q2CBN7 Cluster: Na+/H+ antiporter, CPA1 family protein;
n=4; Rhodobacteraceae|Rep: Na+/H+ antiporter, CPA1
family protein - Oceanicola granulosus HTCC2516
Length = 418
Score = 30.7 bits (66), Expect = 6.6
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = -2
Query: 157 DLTKWMRWGPSL-VLAAGRPNSYFLFLRMGARLPPVAL 47
DLT W RWGP+ +LA P + F +G L + L
Sbjct: 92 DLTPWRRWGPTARLLAIAMPLTIFAVAALGVWLAGLTL 129
>UniRef50_A7D873 Cluster: Exodeoxyribonuclease III Xth; n=2;
Methylobacterium extorquens PA1|Rep:
Exodeoxyribonuclease III Xth - Methylobacterium
extorquens PA1
Length = 344
Score = 30.7 bits (66), Expect = 6.6
Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Frame = +3
Query: 48 RATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALRL-DTGNFAWGSE 224
R G+R P+R++ + E RP A+ + P H R+R G R L + + F + S
Sbjct: 7 RGLAGRRGPLRRRGRRERLRPLADDR-RPALRHAARARPGGGGGRGLTVCEARRFRYRSG 65
Query: 225 CSTRKTRIIDV 257
S ++ I V
Sbjct: 66 SSRHASQAIPV 76
>UniRef50_O74304 Cluster: MAP kinase kinase kinase win1; n=1;
Schizosaccharomyces pombe|Rep: MAP kinase kinase kinase
win1 - Schizosaccharomyces pombe (Fission yeast)
Length = 1436
Score = 30.7 bits (66), Expect = 6.6
Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
Frame = +3
Query: 27 RDHWHKRRATGGKRAPIRKKRKY--ELGRPAANTKLGPQRIHLVRSRGGNTKYRALRLDT 200
RD +K + G K+ + EL +N + Q+ L+ S T YRA+ LDT
Sbjct: 1083 RDRLYKSQLIGRVLDDTTKENRLLKELASSKSNITIRWQQGGLIGSGSFGTVYRAVNLDT 1142
Query: 201 GNFAWGSECSTRKTRI 248
G+ E + K RI
Sbjct: 1143 GDLMAVKEVALHKPRI 1158
>UniRef50_UPI00006A1942 Cluster: Ral GEF with PH domain and SH3
binding motif 1; n=3; Tetrapoda|Rep: Ral GEF with PH
domain and SH3 binding motif 1 - Xenopus tropicalis
Length = 352
Score = 30.3 bits (65), Expect = 8.7
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = +1
Query: 13 RWVSVVIIGIRGGLRAANVRPFVRRGSMS*VARLP 117
RW+ + II +RG A+N+RP + G +S V +P
Sbjct: 214 RWMHLAIITLRGQFLASNLRPKLLVGLLSDVLMVP 248
>UniRef50_Q7P079 Cluster: Putative uncharacterized protein; n=1;
Chromobacterium violaceum|Rep: Putative uncharacterized
protein - Chromobacterium violaceum
Length = 427
Score = 30.3 bits (65), Expect = 8.7
Identities = 17/38 (44%), Positives = 18/38 (47%)
Frame = +3
Query: 105 RPAANTKLGPQRIHLVRSRGGNTKYRALRLDTGNFAWG 218
R A T P I LV+S G N RL TGN WG
Sbjct: 250 RVKAPTGRNPYGIKLVQSAGNNNLSTPDRLPTGNGVWG 287
>UniRef50_Q3VZV5 Cluster: Putative uncharacterized protein; n=3;
Bacteria|Rep: Putative uncharacterized protein - Frankia
sp. EAN1pec
Length = 512
Score = 30.3 bits (65), Expect = 8.7
Identities = 19/79 (24%), Positives = 34/79 (43%)
Frame = +3
Query: 6 RAKMGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRA 185
R ++G+ + +RR GG + + R+ GR + P+R R G ++R
Sbjct: 27 RPRLGVPARYRERRRPRGGTSGLVGRLRRISAGRRPPGRRRSPRRPRSRVGRSGR-RHRV 85
Query: 186 LRLDTGNFAWGSECSTRKT 242
R G A + + R+T
Sbjct: 86 SRAVRGFAAGAARATPRET 104
>UniRef50_A0V4W3 Cluster: Peptidoglycan-binding LysM; n=2;
Comamonadaceae|Rep: Peptidoglycan-binding LysM - Delftia
acidovorans SPH-1
Length = 768
Score = 30.3 bits (65), Expect = 8.7
Identities = 18/57 (31%), Positives = 29/57 (50%)
Frame = +3
Query: 72 PIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALRLDTGNFAWGSECSTRKT 242
P +R++E+ PAA+T + R + G+T A +D G A GS+ S+ T
Sbjct: 378 PGNAQRRFEIRTPAASTSVRGTRFLVQADAAGST---AAAVDEGTVAVGSDASSANT 431
>UniRef50_Q8NFD8 Cluster: Platelet receptor for type III collagen;
n=2; Homo sapiens|Rep: Platelet receptor for type III
collagen - Homo sapiens (Human)
Length = 354
Score = 30.3 bits (65), Expect = 8.7
Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = +3
Query: 6 RAKMGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRI-HLVRSRGGNTK 176
R + +SRDH H A R ++KK+K EL T + RI ++ SR N K
Sbjct: 41 RCRFAVSRDHCHCTLAWKTARLHLKKKKKKELNL-VYTTVMNTNRIFKMIFSRVANVK 97
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 305,642,191
Number of Sequences: 1657284
Number of extensions: 5943161
Number of successful extensions: 14596
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 14348
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14589
length of database: 575,637,011
effective HSP length: 69
effective length of database: 461,284,415
effective search space used: 10148257130
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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