Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_A18
         (275 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39807| Best HMM Match : Ribosomal_S8e (HMM E-Value=0)              113   2e-26
SB_22712| Best HMM Match : Ribosomal_S8e (HMM E-Value=0.068)           30   0.33 
SB_17079| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   0.58 
SB_11579| Best HMM Match : BRF1 (HMM E-Value=5.2)                      27   1.8  
SB_42525| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   2.3  
SB_1748| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   3.1  
SB_1004| Best HMM Match : CPSase_sm_chain (HMM E-Value=0)              26   4.1  
SB_44970| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)               26   4.1  
SB_52661| Best HMM Match : RVT_thumb (HMM E-Value=3)                   25   7.2  
SB_11683| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   7.2  
SB_32914| Best HMM Match : Neur_chan_memb (HMM E-Value=2.1e-08)        25   7.2  
SB_38622| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.5  
SB_20235| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.5  
SB_12139| Best HMM Match : Autotransporter (HMM E-Value=1.4)           25   9.5  
SB_42203| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.5  
SB_32767| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.5  
SB_30963| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.5  

>SB_39807| Best HMM Match : Ribosomal_S8e (HMM E-Value=0)
          Length = 192

 Score =  113 bits (272), Expect = 2e-26
 Identities = 51/68 (75%), Positives = 58/68 (85%)
 Frame = +3

Query: 72  PIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALRLDTGNFAWGSECSTRKTRII 251
           P+R KRK+ELGRP ANTK+G +RIH VR+RGGN K+RA RLDT NF+WGSE  TRK RII
Sbjct: 4   PLRHKRKFELGRPPANTKIGTKRIHEVRTRGGNRKFRAFRLDTENFSWGSESCTRKARII 63

Query: 252 DVVYNASN 275
           DVVYNASN
Sbjct: 64  DVVYNASN 71


>SB_22712| Best HMM Match : Ribosomal_S8e (HMM E-Value=0.068)
          Length = 147

 Score = 29.9 bits (64), Expect = 0.33
 Identities = 14/48 (29%), Positives = 30/48 (62%)
 Frame = +3

Query: 132 PQRIHLVRSRGGNTKYRALRLDTGNFAWGSECSTRKTRIIDVVYNASN 275
           P++I   ++ GG+TK +ALR++ G +   S+    +  I+ V+++ +N
Sbjct: 37  PEKIKERKAYGGHTKIKALRVNKGVYTLKSQGVEVEAPILSVMHSFAN 84


>SB_17079| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2537

 Score = 29.1 bits (62), Expect = 0.58
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +3

Query: 48  RATGGKRAPIRKKRKYELGRPAANTKLGP 134
           R  GG R P+++   +E  +P+ N + GP
Sbjct: 769 RRGGGSRVPVKRSSSFENRKPSPNRRRGP 797


>SB_11579| Best HMM Match : BRF1 (HMM E-Value=5.2)
          Length = 118

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
 Frame = +3

Query: 6   RAKMGISRDHWHKRRATGGKRAPIRKKR---KYELGRPAA 116
           R  M +++    K++   GKRAP+R+K+   +Y   R AA
Sbjct: 4   RLDMELNQREGKKKKEAKGKRAPVRRKKPVQRYSTTRSAA 43


>SB_42525| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 162

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 17/46 (36%), Positives = 24/46 (52%)
 Frame = -1

Query: 158 GSD*VDALGTKLSVGSRAT*LILPLLTNGRTFAARSPPLMPMITTD 21
           GS  +D L  +L+ G R T   +  L +GR  +  SPPL+  I  D
Sbjct: 15  GSGDLDYLERQLNCGLRTT--AVTWLHSGRVVSRNSPPLLGHIVND 58


>SB_1748| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 683

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = +3

Query: 21  ISRDHWHKRRATGGKRAPIRKKRK-YELGRPAANTKLGPQRIHLV 152
           +S D W K++    K+  I+KKR+  +    A   +LG QR+  +
Sbjct: 388 LSYDEWLKQKREQDKKQAIKKKREIIDSHLDAVVAELGKQRVERI 432


>SB_1004| Best HMM Match : CPSase_sm_chain (HMM E-Value=0)
          Length = 2007

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 11/27 (40%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
 Frame = -3

Query: 231 LNIQIPMRSFQ--YQDAGHDI*CYHHG 157
           L++ +  +SF+  Y + GH+I C HHG
Sbjct: 635 LSLAVGCKSFKMKYGNRGHNIPCTHHG 661


>SB_44970| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)
          Length = 506

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
 Frame = +3

Query: 162 GGNTKYRA--LRLDTGNFAWGSECSTRKTRIIDVVY 263
           GG+ KY+   +    G+ AW S  S R T  IDV Y
Sbjct: 91  GGHEKYKTHVIISKDGSSAWFSPASFRSTCKIDVTY 126


>SB_52661| Best HMM Match : RVT_thumb (HMM E-Value=3)
          Length = 378

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 15/51 (29%), Positives = 23/51 (45%)
 Frame = +3

Query: 3   TRAKMGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVR 155
           TR  + +   H H+ R  G +  P+ +KRK E  R     +    +  LVR
Sbjct: 273 TRKGLRLLDKHQHRHRRHGEELRPLSEKRKDEHQRAIETARHYYSKFPLVR 323


>SB_11683| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 204

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 14/46 (30%), Positives = 20/46 (43%)
 Frame = +3

Query: 45  RRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYR 182
           RR  GG R+P  + R+    R     +  P      RSR G+ + R
Sbjct: 104 RRRYGGGRSPSPRGRRRSRSRSPVRRRRSPSLERRSRSRSGSRERR 149


>SB_32914| Best HMM Match : Neur_chan_memb (HMM E-Value=2.1e-08)
          Length = 400

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +3

Query: 6  RAKMGISRDHWHKRRATGGKR 68
          +AKMG  +  WH+    G KR
Sbjct: 28 KAKMGCRKRRWHRNNICGPKR 48


>SB_38622| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3824

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +3

Query: 159  RGGNTKYRALRLDTGNFA 212
            +GGN +YR +  DTG F+
Sbjct: 1647 QGGNVEYRIVSPDTGKFS 1664


>SB_20235| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 96

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -2

Query: 217 PHAKFPVSRRRARYLV 170
           P   FP+ R RARY+V
Sbjct: 28  PEPDFPIDRARARYMV 43


>SB_12139| Best HMM Match : Autotransporter (HMM E-Value=1.4)
          Length = 751

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -2

Query: 241 VLRVEHSDPHAKFPVSRRRARYLVLPPRDL 152
           ++  EH    AK PVSR   + + L P DL
Sbjct: 229 IIENEHRSKRAKVPVSRAGGQGMWLMPGDL 258


>SB_42203| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 228

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = -2

Query: 175 LVLPPRDLTKWMRWGPSLV 119
           L+  PR   +W+ W P+L+
Sbjct: 48  LLFHPRQYNRWLAWNPALL 66



 Score = 25.0 bits (52), Expect = 9.5
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = -2

Query: 175 LVLPPRDLTKWMRWGPSLV 119
           L+  PR   +W+ W P+L+
Sbjct: 65  LLFHPRQYNRWLAWNPALL 83



 Score = 25.0 bits (52), Expect = 9.5
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = -2

Query: 175 LVLPPRDLTKWMRWGPSLV 119
           L+  PR   +W+ W P+L+
Sbjct: 99  LLFHPRQYNRWLAWNPALL 117


>SB_32767| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1259

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = -1

Query: 146 VDALGTKLSVGSRAT*LILPLLTNGRTFAARSPPLMPMITTDTHLGP 6
           VD +   LS  S+++   L   T G T   ++PPL P +  +T+ GP
Sbjct: 23  VDVVEAPLSGSSQSS---LQAQTGGPT---KAPPLQPAVPIETNAGP 63


>SB_30963| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 416

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 17/50 (34%), Positives = 26/50 (52%)
 Frame = -1

Query: 260 NNINNTSLAG*TFRSPCEVSSIKTQGTIFSVTTTGSD*VDALGTKLSVGS 111
           N+ ++T   G  +  P +  +  T    FSV+ TG++    LG  LSVGS
Sbjct: 182 NSPHDTQTVGRVYVYPIQPGASPT----FSVSITGNETFMKLGMSLSVGS 227


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,355,343
Number of Sequences: 59808
Number of extensions: 183629
Number of successful extensions: 371
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 346
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 371
length of database: 16,821,457
effective HSP length: 68
effective length of database: 12,754,513
effective search space used: 293353799
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)