Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_A18
(275 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X67247-1|CAA47670.1| 208|Homo sapiens ribosomal protein S8 prot... 165 2e-41
BC070875-1|AAH70875.1| 208|Homo sapiens ribosomal protein S8 pr... 165 2e-41
AL592166-7|CAI13003.1| 208|Homo sapiens ribosomal protein S8 pr... 165 2e-41
AB062401-1|BAB93488.1| 208|Homo sapiens ribosomal protein S8 pr... 165 2e-41
AL592166-8|CAI13002.1| 188|Homo sapiens ribosomal protein S8 pr... 106 1e-23
AF521131-1|AAM80488.1| 354|Homo sapiens platelet receptor for t... 30 1.1
X89602-1|CAA61761.1| 416|Homo sapiens rTSbeta protein. 27 8.0
X67098-2|CAA47472.1| 361|Homo sapiens protein ( H.sapiens rTS a... 27 8.0
BC001285-1|AAH01285.2| 443|Homo sapiens enolase superfamily mem... 27 8.0
AK127818-1|BAC87148.1| 474|Homo sapiens protein ( Homo sapiens ... 27 8.0
AF305057-2|AAG29536.1| 361|Homo sapiens RTS alpha protein. 27 8.0
AF305057-1|AAG29537.1| 416|Homo sapiens RTS beta protein. 27 8.0
>X67247-1|CAA47670.1| 208|Homo sapiens ribosomal protein S8
protein.
Length = 208
Score = 165 bits (402), Expect = 2e-41
Identities = 74/87 (85%), Positives = 78/87 (89%)
Frame = +3
Query: 15 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALRL 194
MGISRD+WHKRR TGGKR P KKRKYELGRPAANTK+GP+RIH VR RGGN KYRALRL
Sbjct: 1 MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRL 60
Query: 195 DTGNFAWGSECSTRKTRIIDVVYNASN 275
D GNF+WGSEC TRKTRIIDVVYNASN
Sbjct: 61 DVGNFSWGSECCTRKTRIIDVVYNASN 87
>BC070875-1|AAH70875.1| 208|Homo sapiens ribosomal protein S8
protein.
Length = 208
Score = 165 bits (402), Expect = 2e-41
Identities = 74/87 (85%), Positives = 78/87 (89%)
Frame = +3
Query: 15 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALRL 194
MGISRD+WHKRR TGGKR P KKRKYELGRPAANTK+GP+RIH VR RGGN KYRALRL
Sbjct: 1 MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRL 60
Query: 195 DTGNFAWGSECSTRKTRIIDVVYNASN 275
D GNF+WGSEC TRKTRIIDVVYNASN
Sbjct: 61 DVGNFSWGSECCTRKTRIIDVVYNASN 87
>AL592166-7|CAI13003.1| 208|Homo sapiens ribosomal protein S8
protein.
Length = 208
Score = 165 bits (402), Expect = 2e-41
Identities = 74/87 (85%), Positives = 78/87 (89%)
Frame = +3
Query: 15 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALRL 194
MGISRD+WHKRR TGGKR P KKRKYELGRPAANTK+GP+RIH VR RGGN KYRALRL
Sbjct: 1 MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRL 60
Query: 195 DTGNFAWGSECSTRKTRIIDVVYNASN 275
D GNF+WGSEC TRKTRIIDVVYNASN
Sbjct: 61 DVGNFSWGSECCTRKTRIIDVVYNASN 87
>AB062401-1|BAB93488.1| 208|Homo sapiens ribosomal protein S8
protein.
Length = 208
Score = 165 bits (402), Expect = 2e-41
Identities = 74/87 (85%), Positives = 78/87 (89%)
Frame = +3
Query: 15 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALRL 194
MGISRD+WHKRR TGGKR P KKRKYELGRPAANTK+GP+RIH VR RGGN KYRALRL
Sbjct: 1 MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRL 60
Query: 195 DTGNFAWGSECSTRKTRIIDVVYNASN 275
D GNF+WGSEC TRKTRIIDVVYNASN
Sbjct: 61 DVGNFSWGSECCTRKTRIIDVVYNASN 87
>AL592166-8|CAI13002.1| 188|Homo sapiens ribosomal protein S8
protein.
Length = 188
Score = 106 bits (255), Expect = 1e-23
Identities = 58/87 (66%), Positives = 61/87 (70%)
Frame = +3
Query: 15 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALRL 194
MGISRD+WHKRR TGGKR P KKRKYELGRPAANTK+GP+RIH VR RGG
Sbjct: 1 MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGG--------- 51
Query: 195 DTGNFAWGSECSTRKTRIIDVVYNASN 275
C TRKTRIIDVVYNASN
Sbjct: 52 ----------C-TRKTRIIDVVYNASN 67
>AF521131-1|AAM80488.1| 354|Homo sapiens platelet receptor for type
III collagen protein.
Length = 354
Score = 30.3 bits (65), Expect = 1.1
Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = +3
Query: 6 RAKMGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRI-HLVRSRGGNTK 176
R + +SRDH H A R ++KK+K EL T + RI ++ SR N K
Sbjct: 41 RCRFAVSRDHCHCTLAWKTARLHLKKKKKKELNL-VYTTVMNTNRIFKMIFSRVANVK 97
>X89602-1|CAA61761.1| 416|Homo sapiens rTSbeta protein.
Length = 416
Score = 27.5 bits (58), Expect = 8.0
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = -2
Query: 232 VEHSDPHAKFPVSRRRARYLVLPPRD 155
V+H H K+PV +RA Y +PP+D
Sbjct: 361 VDHLHEHFKYPVMIQRASY--MPPKD 384
>X67098-2|CAA47472.1| 361|Homo sapiens protein ( H.sapiens rTS
alpha mRNA containing four open reading frames. ).
Length = 361
Score = 27.5 bits (58), Expect = 8.0
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = -2
Query: 232 VEHSDPHAKFPVSRRRARYLVLPPRD 155
V+H H K+PV +RA Y +PP+D
Sbjct: 306 VDHLHEHFKYPVMIQRASY--MPPKD 329
>BC001285-1|AAH01285.2| 443|Homo sapiens enolase superfamily member
1 protein.
Length = 443
Score = 27.5 bits (58), Expect = 8.0
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = -2
Query: 232 VEHSDPHAKFPVSRRRARYLVLPPRD 155
V+H H K+PV +RA Y +PP+D
Sbjct: 388 VDHLHEHFKYPVMIQRASY--MPPKD 411
>AK127818-1|BAC87148.1| 474|Homo sapiens protein ( Homo sapiens
cDNA FLJ45920 fis, clone PLACE6003004, highly similar
to Homo sapiens rTS beta protein (HSRTSBETA). ).
Length = 474
Score = 27.5 bits (58), Expect = 8.0
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = -2
Query: 232 VEHSDPHAKFPVSRRRARYLVLPPRD 155
V+H H K+PV +RA Y +PP+D
Sbjct: 419 VDHLHEHFKYPVMIQRASY--MPPKD 442
>AF305057-2|AAG29536.1| 361|Homo sapiens RTS alpha protein.
Length = 361
Score = 27.5 bits (58), Expect = 8.0
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = -2
Query: 232 VEHSDPHAKFPVSRRRARYLVLPPRD 155
V+H H K+PV +RA Y +PP+D
Sbjct: 306 VDHLHEHFKYPVMIQRASY--MPPKD 329
>AF305057-1|AAG29537.1| 416|Homo sapiens RTS beta protein.
Length = 416
Score = 27.5 bits (58), Expect = 8.0
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = -2
Query: 232 VEHSDPHAKFPVSRRRARYLVLPPRD 155
V+H H K+PV +RA Y +PP+D
Sbjct: 361 VDHLHEHFKYPVMIQRASY--MPPKD 384
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 45,572,827
Number of Sequences: 237096
Number of extensions: 950008
Number of successful extensions: 1696
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1680
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1696
length of database: 76,859,062
effective HSP length: 69
effective length of database: 60,499,438
effective search space used: 1330987636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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