Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_A18
(275 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g20290.1 68418.m02415 40S ribosomal protein S8 (RPS8A) riboso... 131 6e-32
At5g59240.1 68418.m07424 40S ribosomal protein S8 (RPS8B) 40S ri... 130 1e-31
At5g03650.1 68418.m00324 1,4-alpha-glucan branching enzyme / sta... 29 0.58
At2g36390.1 68415.m04466 1,4-alpha-glucan branching enzyme / sta... 27 1.8
At4g35520.1 68417.m05049 DNA mismatch repair family protein simi... 26 3.1
At4g11710.1 68417.m01869 hypothetical protein 26 3.1
At2g21650.1 68415.m02575 myb family transcription factor contain... 26 3.1
At2g03480.2 68415.m00308 dehydration-responsive protein-related ... 26 3.1
At2g03480.1 68415.m00307 dehydration-responsive protein-related ... 26 3.1
At2g02950.1 68415.m00242 phytochrome kinase substrate 1 (PKS1) i... 26 4.1
At1g13860.4 68414.m01627 dehydration-responsive protein-related ... 26 4.1
At1g13860.3 68414.m01626 dehydration-responsive protein-related ... 26 4.1
At1g13860.1 68414.m01625 dehydration-responsive protein-related ... 26 4.1
At5g48460.1 68418.m05992 fimbrin-like protein, putative strong s... 25 5.4
At3g12340.2 68416.m01539 immunophilin, putative / FKBP-type pept... 25 5.4
At3g12340.1 68416.m01538 immunophilin, putative / FKBP-type pept... 25 5.4
At2g40740.1 68415.m05025 WRKY family transcription factor contai... 25 5.4
At5g43990.2 68418.m05382 SET domain-containing protein identical... 25 7.1
At5g43990.1 68418.m05383 SET domain-containing protein identical... 25 7.1
At2g44220.1 68415.m05503 expressed protein and genefinder conta... 25 7.1
At4g23810.1 68417.m03423 WRKY family transcription factor AR411 ... 25 9.4
At4g11070.2 68417.m01799 WRKY family transcription factor other ... 25 9.4
At4g11070.1 68417.m01798 WRKY family transcription factor other ... 25 9.4
At3g58710.2 68416.m06544 WRKY family transcription factor contai... 25 9.4
At3g58710.1 68416.m06543 WRKY family transcription factor contai... 25 9.4
At2g45590.1 68415.m05669 protein kinase family protein contains ... 25 9.4
At2g33240.1 68415.m04072 myosin, putative similar to myosin (GI:... 25 9.4
At2g17230.1 68415.m01990 phosphate-responsive 1 family protein s... 25 9.4
At2g02880.1 68415.m00238 mucin-related similar to putative mucin... 25 9.4
At1g55600.1 68414.m06364 WRKY family transcription factor simila... 25 9.4
At1g06230.2 68414.m00659 DNA-binding bromodomain-containing prot... 25 9.4
At1g06230.1 68414.m00658 DNA-binding bromodomain-containing prot... 25 9.4
>At5g20290.1 68418.m02415 40S ribosomal protein S8 (RPS8A) ribosomal
protein S8 - Zea mays, PIR:T04088
Length = 222
Score = 131 bits (317), Expect = 6e-32
Identities = 61/88 (69%), Positives = 72/88 (81%), Gaps = 1/88 (1%)
Frame = +3
Query: 15 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQR-IHLVRSRGGNTKYRALR 191
MGISRD HKRRATGGK+ RKKRKYE+GR ANTKL + + +R RGGN K+RALR
Sbjct: 1 MGISRDSIHKRRATGGKQKQWRKKRKYEMGRQPANTKLSSNKTVRRIRVRGGNVKWRALR 60
Query: 192 LDTGNFAWGSECSTRKTRIIDVVYNASN 275
LDTGN++WGSE +TRKTR++DVVYNASN
Sbjct: 61 LDTGNYSWGSEATTRKTRVLDVVYNASN 88
>At5g59240.1 68418.m07424 40S ribosomal protein S8 (RPS8B) 40S
ribosomal protein S8, Prunus armeniaca, EMBL:AF071889
Length = 210
Score = 130 bits (315), Expect = 1e-31
Identities = 63/88 (71%), Positives = 70/88 (79%), Gaps = 1/88 (1%)
Frame = +3
Query: 15 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQR-IHLVRSRGGNTKYRALR 191
MGISRD HKRRATGGK+ RKKRKYELGR ANTKL + + +R RGGN K+RALR
Sbjct: 1 MGISRDSIHKRRATGGKQKMWRKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALR 60
Query: 192 LDTGNFAWGSECSTRKTRIIDVVYNASN 275
LDTGNF+WGSE TRKTRI+DV YNASN
Sbjct: 61 LDTGNFSWGSEAVTRKTRILDVAYNASN 88
>At5g03650.1 68418.m00324 1,4-alpha-glucan branching enzyme / starch
branching enzyme class II (SBE2-2) identical to starch
branching enzyme class II [Arabidopsis thaliana]
GI:726490
Length = 716
Score = 28.7 bits (61), Expect = 0.58
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -3
Query: 117 WQPGDLTHTSSSYEWAHVCRP*PSSYANDHD 25
WQ GD+ +T ++ W+ C SYA HD
Sbjct: 459 WQMGDIIYTLTNRRWSEKC----ISYAESHD 485
>At2g36390.1 68415.m04466 1,4-alpha-glucan branching enzyme / starch
branching enzyme class II (SBE2-1) nearly identical to
starch branching enzyme class II [Arabidopsis thaliana]
GI:619939
Length = 858
Score = 27.1 bits (57), Expect = 1.8
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = -3
Query: 117 WQPGDLTHTSSSYEWAHVCRP*PSSYANDHD 25
WQ GD+T T ++ W C YA HD
Sbjct: 583 WQVGDITFTLTNRRWGEKC----VVYAESHD 609
>At4g35520.1 68417.m05049 DNA mismatch repair family protein similar
to SP|Q9UHC1 DNA mismatch repair protein Mlh3 (MutL
protein homolog 3) {Homo sapiens}; contains Pfam profiles
PF02518: ATPase, histidine kinase-, DNA gyrase B-, and
HSP90-like domain protein, PF01119: DNA mismatch repair
protein, C-terminal domain
Length = 1151
Score = 26.2 bits (55), Expect = 3.1
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +1
Query: 157 PVVVTLNIVPCVLILETSHGDL 222
P +TLN VPC+L + S DL
Sbjct: 1019 PTPITLNAVPCILGVNLSDVDL 1040
>At4g11710.1 68417.m01869 hypothetical protein
Length = 473
Score = 26.2 bits (55), Expect = 3.1
Identities = 8/21 (38%), Positives = 12/21 (57%)
Frame = -3
Query: 117 WQPGDLTHTSSSYEWAHVCRP 55
W G+L + + WA VC+P
Sbjct: 97 WSGGELNTSKAKITWAFVCKP 117
>At2g21650.1 68415.m02575 myb family transcription factor contains
PFAM profile: PF00249 myb-like DNA-binding domain
Length = 101
Score = 26.2 bits (55), Expect = 3.1
Identities = 13/25 (52%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Frame = +3
Query: 30 DHWHK-RRATGGKRAPIRKKRKYEL 101
D WH RA GGK P KR+Y+L
Sbjct: 35 DRWHNVARAVGGK-TPEEAKRQYDL 58
>At2g03480.2 68415.m00308 dehydration-responsive protein-related
similar to early-responsive to dehydration stress ERD3
protein [Arabidopsis thaliana] GI:15320410; contains
Pfam profile PF03141: Putative methyltransferase;
non-consensus GA donor site at exon 4
Length = 595
Score = 26.2 bits (55), Expect = 3.1
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -2
Query: 229 EHSDPHAKFPVSRRRARYLVLPPRDLTKWMRW 134
E D H +F R + R +V PPRD +RW
Sbjct: 114 EELDRHCEF--EREKERCVVRPPRDYKIPLRW 143
>At2g03480.1 68415.m00307 dehydration-responsive protein-related
similar to early-responsive to dehydration stress ERD3
protein [Arabidopsis thaliana] GI:15320410; contains
Pfam profile PF03141: Putative methyltransferase;
non-consensus GA donor site at exon 4
Length = 606
Score = 26.2 bits (55), Expect = 3.1
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -2
Query: 229 EHSDPHAKFPVSRRRARYLVLPPRDLTKWMRW 134
E D H +F R + R +V PPRD +RW
Sbjct: 114 EELDRHCEF--EREKERCVVRPPRDYKIPLRW 143
>At2g02950.1 68415.m00242 phytochrome kinase substrate 1 (PKS1)
identical to Swiss-Prot:Q9SWI1 phytochrome kinase
substrate 1 [Arabidopsis thaliana]
Length = 439
Score = 25.8 bits (54), Expect = 4.1
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +3
Query: 69 APIRKKRKYELGRPAANTKLGPQRIHLVRSRGGN 170
+P+R+ R ++ R K PQR S GGN
Sbjct: 339 SPVRRNRPTQIPRIPITAKSAPQRRKSSSSSGGN 372
>At1g13860.4 68414.m01627 dehydration-responsive protein-related
similar to early-responsive to dehydration stress ERD3
protein [Arabidopsis thaliana] GI:15320410; contains
Pfam profile PF03141: Putative methyltransferase
Length = 603
Score = 25.8 bits (54), Expect = 4.1
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = -2
Query: 232 VEHSDPHAKFPVSRRRARYLVLPPRDLTKWMRW 134
V SD + +F +R R LV PPRD +RW
Sbjct: 97 VTESDRNCEF--AREEERCLVRPPRDYKIPLRW 127
>At1g13860.3 68414.m01626 dehydration-responsive protein-related
similar to early-responsive to dehydration stress ERD3
protein [Arabidopsis thaliana] GI:15320410; contains
Pfam profile PF03141: Putative methyltransferase
Length = 603
Score = 25.8 bits (54), Expect = 4.1
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = -2
Query: 232 VEHSDPHAKFPVSRRRARYLVLPPRDLTKWMRW 134
V SD + +F +R R LV PPRD +RW
Sbjct: 97 VTESDRNCEF--AREEERCLVRPPRDYKIPLRW 127
>At1g13860.1 68414.m01625 dehydration-responsive protein-related
similar to early-responsive to dehydration stress ERD3
protein [Arabidopsis thaliana] GI:15320410; contains
Pfam profile PF03141: Putative methyltransferase
Length = 603
Score = 25.8 bits (54), Expect = 4.1
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = -2
Query: 232 VEHSDPHAKFPVSRRRARYLVLPPRDLTKWMRW 134
V SD + +F +R R LV PPRD +RW
Sbjct: 97 VTESDRNCEF--AREEERCLVRPPRDYKIPLRW 127
>At5g48460.1 68418.m05992 fimbrin-like protein, putative strong
similarity to fimbrin-like protein AtFim2 [Arabidopsis
thaliana] GI:2737926; contains Pfam profile PF00307:
Calponin homology (CH) domain
Length = 654
Score = 25.4 bits (53), Expect = 5.4
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = -2
Query: 256 TSIIRVLRVEHSDP-HAKFPVSRRRARYLVLPPRDLTKWMRWGPSLVLAAGRPNSYFLFL 80
T+++ VL EH +P H S RA+ LVL D R+ + + G PN F+
Sbjct: 306 TNLLNVLAPEHKNPSHLAVKSSFERAK-LVLEHADKMGCRRYLTAKDIVEGSPNLNLAFV 364
>At3g12340.2 68416.m01539 immunophilin, putative / FKBP-type
peptidyl-prolyl cis-trans isomerase, putative contains
Pfam profile: PF00254, FKBP-type peptidyl-prolyl
cis-trans isomerases
Length = 186
Score = 25.4 bits (53), Expect = 5.4
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +3
Query: 48 RATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTK 176
R+ GK+A +RK +K G P+ T + + L + G K
Sbjct: 72 RSGTGKKAEVRKSKKGSSGSPSKGTGIYLPPVSLKEAVSGGLK 114
>At3g12340.1 68416.m01538 immunophilin, putative / FKBP-type
peptidyl-prolyl cis-trans isomerase, putative contains
Pfam profile: PF00254, FKBP-type peptidyl-prolyl
cis-trans isomerases
Length = 694
Score = 25.4 bits (53), Expect = 5.4
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +3
Query: 48 RATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTK 176
R+ GK+A +RK +K G P+ T + + L + G K
Sbjct: 72 RSGTGKKAEVRKSKKGSSGSPSKGTGIYLPPVSLKEAVSGGLK 114
>At2g40740.1 68415.m05025 WRKY family transcription factor contains
Pfam profile: PF03106 WRKY DNA -binding domain
Length = 292
Score = 25.4 bits (53), Expect = 5.4
Identities = 9/27 (33%), Positives = 15/27 (55%)
Frame = -2
Query: 169 LPPRDLTKWMRWGPSLVLAAGRPNSYF 89
LPP D W ++G +L + P +Y+
Sbjct: 170 LPPDDNHTWRKYGQKEILGSRFPRAYY 196
>At5g43990.2 68418.m05382 SET domain-containing protein identical to
SET domain protein SUVR2 [Arabidopsis thaliana]
GI:15290521; contains Pfam profiles PF00856: SET domain,
PF05033: Pre-SET motif; identical to cDNA SET domain
protein SUVR2 GI:15290520
Length = 740
Score = 25.0 bits (52), Expect = 7.1
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -1
Query: 92 LPLLTNGRTFAARSPPLMPMITTD 21
L L TNGR A + P +P +TT+
Sbjct: 330 LDLATNGRDSANQLPKNLPFVTTN 353
>At5g43990.1 68418.m05383 SET domain-containing protein identical to
SET domain protein SUVR2 [Arabidopsis thaliana]
GI:15290521; contains Pfam profiles PF00856: SET domain,
PF05033: Pre-SET motif; identical to cDNA SET domain
protein SUVR2 GI:15290520
Length = 717
Score = 25.0 bits (52), Expect = 7.1
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -1
Query: 92 LPLLTNGRTFAARSPPLMPMITTD 21
L L TNGR A + P +P +TT+
Sbjct: 307 LDLATNGRDSANQLPKNLPFVTTN 330
>At2g44220.1 68415.m05503 expressed protein and genefinder contains
Pfam profile PF03080: Arabidopsis proteins of unknown
function
Length = 393
Score = 25.0 bits (52), Expect = 7.1
Identities = 11/32 (34%), Positives = 15/32 (46%)
Frame = +3
Query: 36 WHKRRATGGKRAPIRKKRKYELGRPAANTKLG 131
WHK PIR+ +K +L RP + G
Sbjct: 95 WHKAGECPKNTVPIRRTKKEDLLRPKSIRSFG 126
>At4g23810.1 68417.m03423 WRKY family transcription factor AR411 -
Arabidopsis thaliana (thale cress), PID:g1669603
Length = 324
Score = 24.6 bits (51), Expect = 9.4
Identities = 9/26 (34%), Positives = 14/26 (53%)
Frame = -2
Query: 166 PPRDLTKWMRWGPSLVLAAGRPNSYF 89
P D+ W ++G +L A P SY+
Sbjct: 156 PQDDVFSWRKYGQKDILGAKFPRSYY 181
>At4g11070.2 68417.m01799 WRKY family transcription factor other
putative proteins, Arabidopsis thaliana
Length = 281
Score = 24.6 bits (51), Expect = 9.4
Identities = 9/26 (34%), Positives = 14/26 (53%)
Frame = -2
Query: 166 PPRDLTKWMRWGPSLVLAAGRPNSYF 89
P D+ W ++G +L A P SY+
Sbjct: 107 PHDDIFSWRKYGQKDILGAKFPRSYY 132
>At4g11070.1 68417.m01798 WRKY family transcription factor other
putative proteins, Arabidopsis thaliana
Length = 313
Score = 24.6 bits (51), Expect = 9.4
Identities = 9/26 (34%), Positives = 14/26 (53%)
Frame = -2
Query: 166 PPRDLTKWMRWGPSLVLAAGRPNSYF 89
P D+ W ++G +L A P SY+
Sbjct: 139 PHDDIFSWRKYGQKDILGAKFPRSYY 164
>At3g58710.2 68416.m06544 WRKY family transcription factor contains
Pfam profile: PF03106 WRKY DNA -binding domain
Length = 271
Score = 24.6 bits (51), Expect = 9.4
Identities = 10/37 (27%), Positives = 17/37 (45%)
Frame = -2
Query: 199 VSRRRARYLVLPPRDLTKWMRWGPSLVLAAGRPNSYF 89
V ++R V PP D W ++G + + P Y+
Sbjct: 57 VEGSKSRGEVYPPSDSWAWRKYGQKPIKGSPYPRGYY 93
>At3g58710.1 68416.m06543 WRKY family transcription factor contains
Pfam profile: PF03106 WRKY DNA -binding domain
Length = 272
Score = 24.6 bits (51), Expect = 9.4
Identities = 10/37 (27%), Positives = 17/37 (45%)
Frame = -2
Query: 199 VSRRRARYLVLPPRDLTKWMRWGPSLVLAAGRPNSYF 89
V ++R V PP D W ++G + + P Y+
Sbjct: 58 VEGSKSRGEVYPPSDSWAWRKYGQKPIKGSPYPRGYY 94
>At2g45590.1 68415.m05669 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 683
Score = 24.6 bits (51), Expect = 9.4
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +3
Query: 3 TRAKMGISRDHWHKRRATGGKRAPI 77
++ K+G RD W K+ GG R I
Sbjct: 362 SKLKVGSKRDWWWKQDNNGGSRGGI 386
>At2g33240.1 68415.m04072 myosin, putative similar to myosin
(GI:433663) [Arabidopsis thaliana]; myosin my5A
(SP:Q02440) {Gallus gallus}
Length = 1770
Score = 24.6 bits (51), Expect = 9.4
Identities = 11/41 (26%), Positives = 21/41 (51%)
Frame = +3
Query: 69 APIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALR 191
AP ++ +Y+LG+P+ L H + + + +Y A R
Sbjct: 279 APEQETERYQLGKPSTFHYLNQSNCHALDAIDDSKEYLATR 319
>At2g17230.1 68415.m01990 phosphate-responsive 1 family protein
similar to phi-1 (phosphate-induced gene) [Nicotiana
tabacum] GI:3759184; contains Pfam profile PF04674:
Phosphate-induced protein 1 conserved region
Length = 363
Score = 24.6 bits (51), Expect = 9.4
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = -2
Query: 211 AKFPVSRRRARYLVLPPRDLT 149
A FPV + YLVL D+T
Sbjct: 182 ASFPVDHKNGMYLVLTSHDVT 202
>At2g02880.1 68415.m00238 mucin-related similar to putative mucin
GI:18071389 [Oryza sativa]
Length = 314
Score = 24.6 bits (51), Expect = 9.4
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +3
Query: 30 DHWHKRRATGGKRAPIRKKRKYELG 104
+HW +RR GK R+++K E+G
Sbjct: 99 EHWDERRGKSGK-VEKREEKKKEIG 122
>At1g55600.1 68414.m06364 WRKY family transcription factor similar
to SPF1 protein GI:484261 from [Ipomoea batatas];
contains Pfam profile: PF03106 WRKY DNA -binding domain
Length = 485
Score = 24.6 bits (51), Expect = 9.4
Identities = 9/25 (36%), Positives = 13/25 (52%)
Frame = -2
Query: 163 PRDLTKWMRWGPSLVLAAGRPNSYF 89
P D +W ++G +V P SYF
Sbjct: 306 PNDGYRWRKYGQKVVKGNPNPRSYF 330
>At1g06230.2 68414.m00659 DNA-binding bromodomain-containing protein
contains bromodomain, INTERPRO:IPR001487
Length = 766
Score = 24.6 bits (51), Expect = 9.4
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +1
Query: 154 DPVVVTLNIVPCVLILETSHGDLNVQPA 237
DP+VV N + + SHGD N+ A
Sbjct: 72 DPIVVVKNSIEEAALGTNSHGDKNLTEA 99
>At1g06230.1 68414.m00658 DNA-binding bromodomain-containing protein
contains bromodomain, INTERPRO:IPR001487
Length = 766
Score = 24.6 bits (51), Expect = 9.4
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +1
Query: 154 DPVVVTLNIVPCVLILETSHGDLNVQPA 237
DP+VV N + + SHGD N+ A
Sbjct: 72 DPIVVVKNSIEEAALGTNSHGDKNLTEA 99
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,476,381
Number of Sequences: 28952
Number of extensions: 124943
Number of successful extensions: 302
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 295
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 300
length of database: 12,070,560
effective HSP length: 69
effective length of database: 10,072,872
effective search space used: 221603184
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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