Samia BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_A17
         (476 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q0DUF0 Cluster: Os03g0190000 protein; n=1; Oryza sativa...    33   3.3  
UniRef50_Q6YYG1 Cluster: Putative uncharacterized protein OSJNBa...    33   4.3  
UniRef50_Q3ZYK2 Cluster: Radical SAM domain protein; n=3; Dehalo...    32   7.5  
UniRef50_UPI0000DD7CD1 Cluster: PREDICTED: hypothetical protein;...    31   10.0 
UniRef50_Q4RX84 Cluster: Chromosome 11 SCAF14979, whole genome s...    31   10.0 
UniRef50_Q9PBS8 Cluster: DNA primase; n=2; Xylella fastidiosa|Re...    31   10.0 

>UniRef50_Q0DUF0 Cluster: Os03g0190000 protein; n=1; Oryza sativa
           (japonica cultivar-group)|Rep: Os03g0190000 protein -
           Oryza sativa subsp. japonica (Rice)
          Length = 271

 Score = 33.1 bits (72), Expect = 3.3
 Identities = 14/23 (60%), Positives = 15/23 (65%)
 Frame = +2

Query: 392 PVHPPRHPQFLAPRANALSPLPP 460
           P+ PPR P  L P   ALSPLPP
Sbjct: 165 PLAPPRPPPILQPAPPALSPLPP 187


>UniRef50_Q6YYG1 Cluster: Putative uncharacterized protein
           OSJNBa0051E21.35; n=1; Oryza sativa (japonica
           cultivar-group)|Rep: Putative uncharacterized protein
           OSJNBa0051E21.35 - Oryza sativa subsp. japonica (Rice)
          Length = 330

 Score = 32.7 bits (71), Expect = 4.3
 Identities = 15/28 (53%), Positives = 18/28 (64%)
 Frame = -3

Query: 471 APTLGGRGDRAFALGAKNWGCRGGCTGC 388
           A T GGRG   F   A+ +GCRGG +GC
Sbjct: 244 AVTPGGRGCCGFLRRARCFGCRGGGSGC 271


>UniRef50_Q3ZYK2 Cluster: Radical SAM domain protein; n=3;
           Dehalococcoides|Rep: Radical SAM domain protein -
           Dehalococcoides sp. (strain CBDB1)
          Length = 345

 Score = 31.9 bits (69), Expect = 7.5
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = -3

Query: 450 GDRAFALGAKNWGCRGGCTGCKN 382
           G + F+LG+  WGC   CTGC+N
Sbjct: 71  GSQVFSLGS--WGCNFHCTGCQN 91


>UniRef50_UPI0000DD7CD1 Cluster: PREDICTED: hypothetical protein;
           n=2; Homo sapiens|Rep: PREDICTED: hypothetical protein -
           Homo sapiens
          Length = 406

 Score = 31.5 bits (68), Expect = 10.0
 Identities = 13/24 (54%), Positives = 14/24 (58%)
 Frame = +2

Query: 386 LQPVHPPRHPQFLAPRANALSPLP 457
           LQP  PPRHP+ L P      PLP
Sbjct: 293 LQPPSPPRHPEPLTPGKEPREPLP 316


>UniRef50_Q4RX84 Cluster: Chromosome 11 SCAF14979, whole genome
           shotgun sequence; n=5; Euteleostomi|Rep: Chromosome 11
           SCAF14979, whole genome shotgun sequence - Tetraodon
           nigroviridis (Green puffer)
          Length = 127

 Score = 31.5 bits (68), Expect = 10.0
 Identities = 16/52 (30%), Positives = 24/52 (46%)
 Frame = -3

Query: 198 PVEPLQLHHDFEGELLKPLNRKKITSTRITKHSPPKTILYTLKSMGIIKWEH 43
           P EP  L +D +G+L      + + +    K S  K I   L   G++K EH
Sbjct: 62  PEEPSSLFYDEDGDLAHEFYEETVVTKNGRKKSKLKRIQKNLTPQGVVKLEH 113


>UniRef50_Q9PBS8 Cluster: DNA primase; n=2; Xylella fastidiosa|Rep:
            DNA primase - Xylella fastidiosa
          Length = 1371

 Score = 31.5 bits (68), Expect = 10.0
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = -3

Query: 153  LKPLNRKKITSTRITKHSPPKTILYTLKSMG-IIKWEHIIMILNKYK 16
            LKP    ++ S ++   SP K    TL+SMG ++  EH IM   K++
Sbjct: 1009 LKPWIATEVVSRQVPALSPEKEFAETLRSMGCLVSGEHPIMDAKKHR 1055


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 473,709,557
Number of Sequences: 1657284
Number of extensions: 9080238
Number of successful extensions: 25135
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 23388
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25063
length of database: 575,637,011
effective HSP length: 94
effective length of database: 419,852,315
effective search space used: 26870548160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)