Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_A17
         (476 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   1.5  
SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces pomb...    26   2.6  
SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pomb...    26   3.4  
SPBC365.02c |cox10||protoheme IX farnesyltransferase|Schizosacch...    25   4.5  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    25   5.9  
SPBC3B9.04 |||mitochondrial methyltransferase |Schizosaccharomyc...    25   7.9  
SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr 1|||...    25   7.9  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +1

Query: 397  APAAAPPILGAQGKCPVPPPS 459
            AP+ APP+    G  PVP PS
Sbjct: 1078 APSGAPPVPAPSGIPPVPKPS 1098



 Score = 24.6 bits (51), Expect = 7.9
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +1

Query: 406  AAPPILGAQGKCPVPPPS 459
            AAPP+    G  PVP PS
Sbjct: 1148 AAPPVPAPSGAPPVPKPS 1165


>SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 649

 Score = 26.2 bits (55), Expect = 2.6
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -1

Query: 248 VDESVISGFFFYTNAVDR*SLYSFTMTLRANC 153
           VD  ++ G  F+ N   R +LY    +LR NC
Sbjct: 57  VDMILLGGDIFHDNKPSRKALYQALRSLRLNC 88


>SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1328

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -3

Query: 450 GDRAFALGAKNWGCRGGCTGCKN 382
           G +AF LG  N+G     TGCK+
Sbjct: 903 GTKAFHLGEYNYGRPAQITGCKD 925


>SPBC365.02c |cox10||protoheme IX
           farnesyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 387

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 13/40 (32%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
 Frame = +3

Query: 354 ISLGKID-YINFYNPCTRRGTPNSWRPGQMPCPPSLLEWA 470
           + LG I  Y+  Y P  R    N+W    +   P L+ WA
Sbjct: 192 LGLGNIVLYMGIYTPLKRISIVNTWVGSLVGAIPPLMGWA 231


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +1

Query: 397 APAAAPPILGAQGKCPVPPPS 459
           AP +  P + +  K P+PPPS
Sbjct: 276 APVSMNPAINSTSKPPLPPPS 296


>SPBC3B9.04 |||mitochondrial methyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 248

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -3

Query: 378 YSQFYQEKYSLKITRNRCLVDCYIMKGIYCRNFK 277
           Y+Q   +KYS KITR       Y ++    RN K
Sbjct: 53  YNQI-ADKYSRKITREEIFSGIYFLRYFLLRNAK 85


>SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 709

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -2

Query: 118 KDYQALAPKDYFIHFEINGNN*MGAYNYDS 29
           KD+Q + P+ + I  EIN N   G+ N ++
Sbjct: 444 KDWQVVNPQTWLIAPEINVNKSFGSVNNET 473


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,939,070
Number of Sequences: 5004
Number of extensions: 37816
Number of successful extensions: 106
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 184476110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)